How to integrate Cody MCP with Atomic Agent

Connect Atomic Agent to Cody MCP. Summarize key findings from q2 reports, find policy details on employee benefits, and more using natural language, with authentication handled for you.

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Cody is an AI assistant built for businesses, trained on your company's knowledge and data. It delivers instant answers and insights, tailored for your team.

21 Tools

Introduction

Atomic Agent is an open-source AI agent that runs on your machine and supports local models through llama.cpp. Connect it to 1,500+ apps through Composio, including Cody.

This guide uses Atomic Agent's built-in Composio integration. You need Atomic Agent v0.5.6 or later, your own Composio API key, and a Cody account. See the Atomic Agent documentation for installation instructions.

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How Atomic Agent connects to Cody

Atomic Agent connects to Composio's Tool Router over Streamable HTTP MCP. It discovers the tools needed for your request, and Composio handles account authentication.

Execution and account-connection tools follow Atomic Agent's configured approval policy. Review any approval prompt before allowing an action on your connected account.

Connect Cody to Atomic Agent

  1. Sign up or sign in to the Composio dashboard. Copy your API key.
  2. In Atomic Agent, open the Integrations tab and select Composio. Select API key, press e, paste the key, and press Enter. The tools become available immediately, without a restart.
  3. Ask Atomic Agent to do something in Cody. It searches Composio for the right tool.
  4. On first use, open the sign-in link returned in the chat. Connect your Cody account, then return to Atomic Agent to continue.

Headless setup

Add the following line to ~/.atomic-agent/.env, replacing YOUR_COMPOSIO_API_KEY with your key. Start Atomic Agent after saving the file.

bash
COMPOSIO_API_KEY=YOUR_COMPOSIO_API_KEY

What is the Cody MCP server, and what's possible with it?

The Cody MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Cody account. It provides structured and secure access so your agent can perform Cody operations on your behalf.

Use Cody from Atomic Agent

With your account connected, ask Atomic Agent to work with Cody in natural language. You can connect more apps through the same Composio integration as you need them.

Visit the Atomic Agent website or inspect the Atomic Agent source code.

Troubleshooting

Why is my API key rejected?

Copy the key directly from the Composio dashboard. Atomic Agent requires ASCII characters because it sends the key in an HTTP header. Remove any extra characters introduced when copying.

Why are Composio tools unavailable after saving a key?

Check that you use Atomic Agent v0.5.6 or later and that Composio is enabled in your configuration. A "composio": { "enabled": false } setting disables the integration while keeping the saved key on disk.

Does Composio have a free plan?

The Hobby plan includes 100,000 tool calls per month. Composio-managed OAuth apps have a lower included allowance. See Composio pricing for the current limits that apply to your connection.

TOOLS

Supported Tools

Every Cody action and event your agent gets out of the box.

Create Conversation

Tool to create a new conversation with a specified bot.

Create Document

Tool to create a new document with text or HTML content in Cody AI.

Create Document From File

Tool to create a document by uploading a file (up to 100 MB).

Create Document from Webpage

Tool to create a document from a publicly accessible webpage URL.

Create Folder

Tool to create a new folder in Cody AI for organizing content.

Delete Conversation

Tool to delete a conversation by its ID.

Delete Document

Tool to delete a document by id.

Get Conversation

Tool to fetch a conversation by its ID from Cody AI.

Get Document

Tool to retrieve a specific document by its identifier from Cody AI.

Get Folder

Tool to retrieve a specific folder by its identifier.

Get Message

Tool to fetch a specific message by its ID from Cody AI.

Get Upload Signed URL

Tool to get an AWS S3 signed upload URL for file uploads.

List Bots

Tool to get all bots with optional keyword filtering.

List Conversations

Tool to get all conversations with optional filtering by bot, keyword, or includes.

List Documents

Tool to retrieve all documents from Cody AI account with optional filtering.

List Folders

Tool to retrieve all folders with optional keyword filtering.

List Messages

Tool to retrieve a paginated list of messages from Cody, optionally filtered by conversation.

Send Message

Tool to send a message to Cody AI and receive an AI-generated response.

Send Message for Stream

Tool to send a message to Cody AI and receive a Server-Sent Events (SSE) stream URL for the AI response.

Update Conversation

Tool to update a conversation by its ID including name, bot_id, and document_ids.

Update Folder

Tool to update a folder by its ID.

FAQ

Frequently asked questions

With a standalone Cody MCP server, the agents and LLMs can only access a fixed set of Cody tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Cody and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Atomic Agent fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Cody tools.

Yes, absolutely. You can configure which Cody scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Cody data and credentials are handled as safely as possible.

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