How to integrate Jira MCP with Autogen

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Introduction

This guide walks you through connecting Jira to AutoGen using the Composio tool router. By the end, you'll have a working Jira agent that can create a new bug in project alpha, assign issue jira-102 to sarah lee, add comment to ticket jira-207 with update, start a new sprint for the dev board through natural language commands.

This guide will help you understand how to give your AutoGen agent real control over a Jira account through Composio's Jira MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

TL;DR

Here's what you'll learn:
  • Get and set up your OpenAI and Composio API keys
  • Install the required dependencies for Autogen and Composio
  • Initialize Composio and create a Tool Router session for Jira
  • Wire that MCP URL into Autogen using McpWorkbench and StreamableHttpServerParams
  • Configure an Autogen AssistantAgent that can call Jira tools
  • Run a live chat loop where you ask the agent to perform Jira operations

What is AutoGen?

Autogen is a framework for building multi-agent conversational AI systems from Microsoft. It enables you to create agents that can collaborate, use tools, and maintain complex workflows.

Key features include:

  • Multi-Agent Systems: Build collaborative agent workflows
  • MCP Workbench: Native support for Model Context Protocol tools
  • Streaming HTTP: Connect to external services through streamable HTTP
  • AssistantAgent: Pre-built agent class for tool-using assistants

What is the Jira MCP server, and what's possible with it?

The Jira MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Jira account. It provides structured and secure access to your Jira projects, so your agent can perform actions like creating issues, managing sprints, commenting on tasks, assigning work, and tracking releases on your behalf.

  • Automated issue creation and tracking: Let your agent create new bugs, tasks, or stories, and keep tabs on issues across your Jira projects.
  • Collaborative commenting and updates: Have your agent add rich-text comments or attachments to issues, keeping team communication seamless and up to date.
  • Effortless assignment and watcher management: Easily assign issues to teammates or add watchers, ensuring everyone stays in the loop and accountable.
  • Sprint and release planning: Empower your agent to create sprints, manage boards, and organize project milestones or versions for agile teams.
  • Issue linking and bulk operations: Direct your agent to link related issues or perform bulk creation of tasks, streamlining project workflows and dependencies.

Supported Tools & Triggers

Tools
Triggers
Add AttachmentUploads and attaches a file to a jira issue.
Add CommentAdds a comment using atlassian document format (adf) for rich text to an existing jira issue.
Add Watcher to IssueAdds a user to an issue's watcher list by account id.
Assign IssueAssigns a jira issue to a user, default assignee, or unassigns; supports email/name lookup.
Bulk Create IssuesCreates multiple jira issues (up to 50 per call) with full feature support including markdown, assignee resolution, and priority handling.
Create IssueCreates a new jira issue (e.
Link IssuesLinks two jira issues using a specified link type with optional comment.
Create ProjectCreates a new jira project with required lead, template, and type configuration.
Create SprintCreates a new sprint on a jira board with optional start/end dates and goal.
Create VersionCreates a new version for releases or milestones in a jira project.
Delete CommentDeletes a specific comment from a jira issue using its id and the issue's id/key; requires user permission to delete comments on the issue.
Delete IssueDeletes a jira issue by its id or key.
Delete VersionDeletes a jira version and optionally reassigns its issues.
Delete WorklogDeletes a worklog from a jira issue with estimate adjustment options.
Edit IssueUpdates an existing jira issue with field values and operations.
Find UsersSearches for jira users by email, display name, or username to find account ids; essential for assigning issues, adding watchers, and other user-related operations.
Get All Issue Type SchemesRetrieves all jira issue type schemes with optional filtering and pagination.
Get all projectsRetrieves all visible projects using the modern paginated jira api with server-side filtering and pagination support.
Get Issue StatusesRetrieves all available issue statuses from jira with details.
Get All UsersRetrieves all users from the jira instance including active, inactive, and other user states with pagination support.
Get CommentRetrieves a specific comment by id from a jira issue with optional expansions.
Get Current UserRetrieves detailed information about the currently authenticated jira user.
Get IssueRetrieves a jira issue by id or key with customizable fields and expansions.
Get Issue Link TypesRetrieves all configured issue link types from jira.
Get Issue PropertyRetrieves a custom property from a jira issue by key.
Get Issue ResolutionsRetrieves all available issue resolution types from jira.
Get issue typesRetrieves all jira issue types available to the user using the modern api v3 endpoint; results vary based on 'administer jira' global or 'browse projects' project permissions.
Get Issue Type SchemeGets a jira issue type scheme by id with all associated issue types.
Get Issue WatchersRetrieves users watching a jira issue for update notifications.
Get Issue WorklogsRetrieves worklogs for a jira issue with user permission checks.
Get Project VersionsRetrieves all versions for a jira project with optional expansion.
Get Issue Remote LinksRetrieves links from a jira issue to external resources.
Get TransitionsRetrieves available workflow transitions for a jira issue.
Get Issue VotesFetches voting details for a jira issue; requires voting to be enabled in jira's general settings.
Get WorklogsRetrieves worklogs for a specified jira issue.
List BoardsRetrieves paginated jira boards with filtering and sorting options.
List Issue CommentsRetrieves paginated comments from a jira issue with optional ordering.
List SprintsRetrieves paginated sprints from a jira board with optional state filtering.
Move Issues to SprintMoves one or more jira issues to a specified active sprint.
Remove Watcher from IssueRemoves a user from an issue's watcher list by account id.
Search Issues Using JQL (GET)Searches for jira issues using jql with pagination and field selection.
Search Issues Using JQL (POST)Searches for jira issues using jql via post request for complex queries; ideal for lengthy jql queries that might exceed url character limits
Search issuesAdvanced jira issue search supporting structured filters and raw jql.
Send Notification for IssueSends a customized email notification for a jira issue.
Transition IssueTransitions a jira issue to a different workflow state, with support for transition name lookup and user assignment by email.
Update CommentUpdates text content or visibility of an existing jira comment.

What is the Composio tool router, and how does it fit here?

What is Tool Router?

Composio's Tool Router helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Tool Router

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Tool Router works

The Tool Router follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Prerequisites

You will need:

  • A Composio API key
  • An OpenAI API key (used by Autogen's OpenAIChatCompletionClient)
  • A Jira account you can connect to Composio
  • Some basic familiarity with Autogen and Python async

Getting API Keys for OpenAI and Composio

OpenAI API Key
  • Go to the OpenAI dashboard and create an API key. You'll need credits to use the models, or you can connect to another model provider.
  • Keep the API key safe.
Composio API Key
  • Log in to the Composio dashboard.
  • Navigate to your API settings and generate a new API key.
  • Store this key securely as you'll need it for authentication.

Install dependencies

bash
pip install composio python-dotenv
pip install autogen-agentchat autogen-ext-openai autogen-ext-tools

Install Composio, Autogen extensions, and dotenv.

What's happening:

  • composio connects your agent to Jira via MCP
  • autogen-agentchat provides the AssistantAgent class
  • autogen-ext-openai provides the OpenAI model client
  • autogen-ext-tools provides MCP workbench support

Set up environment variables

bash
COMPOSIO_API_KEY=your-composio-api-key
OPENAI_API_KEY=your-openai-api-key
USER_ID=your-user-identifier@example.com

Create a .env file in your project folder.

What's happening:

  • COMPOSIO_API_KEY is required to talk to Composio
  • OPENAI_API_KEY is used by Autogen's OpenAI client
  • USER_ID is how Composio identifies which user's Jira connections to use

Import dependencies and create Tool Router session

python
import asyncio
import os
from dotenv import load_dotenv
from composio import Composio

from autogen_agentchat.agents import AssistantAgent
from autogen_ext.models.openai import OpenAIChatCompletionClient
from autogen_ext.tools.mcp import McpWorkbench, StreamableHttpServerParams

load_dotenv()

async def main():
    # Initialize Composio and create a Jira session
    composio = Composio(api_key=os.getenv("COMPOSIO_API_KEY"))
    session = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["jira"]
    )
    url = session.mcp.url
What's happening:
  • load_dotenv() reads your .env file
  • Composio(api_key=...) initializes the SDK
  • create(...) creates a Tool Router session that exposes Jira tools
  • session.mcp.url is the MCP endpoint that Autogen will connect to

Configure MCP parameters for Autogen

python
# Configure MCP server parameters for Streamable HTTP
server_params = StreamableHttpServerParams(
    url=url,
    timeout=30.0,
    sse_read_timeout=300.0,
    terminate_on_close=True,
    headers={"x-api-key": os.getenv("COMPOSIO_API_KEY")}
)

Autogen expects parameters describing how to talk to the MCP server. That is what StreamableHttpServerParams is for.

What's happening:

  • url points to the Tool Router MCP endpoint from Composio
  • timeout is the HTTP timeout for requests
  • sse_read_timeout controls how long to wait when streaming responses
  • terminate_on_close=True cleans up the MCP server process when the workbench is closed

Create the model client and agent

python
# Create model client
model_client = OpenAIChatCompletionClient(
    model="gpt-5",
    api_key=os.getenv("OPENAI_API_KEY")
)

# Use McpWorkbench as context manager
async with McpWorkbench(server_params) as workbench:
    # Create Jira assistant agent with MCP tools
    agent = AssistantAgent(
        name="jira_assistant",
        description="An AI assistant that helps with Jira operations.",
        model_client=model_client,
        workbench=workbench,
        model_client_stream=True,
        max_tool_iterations=10
    )

What's happening:

  • OpenAIChatCompletionClient wraps the OpenAI model for Autogen
  • McpWorkbench connects the agent to the MCP tools
  • AssistantAgent is configured with the Jira tools from the workbench

Run the interactive chat loop

python
print("Chat started! Type 'exit' or 'quit' to end the conversation.\n")
print("Ask any Jira related question or task to the agent.\n")

# Conversation loop
while True:
    user_input = input("You: ").strip()

    if user_input.lower() in ["exit", "quit", "bye"]:
        print("\nGoodbye!")
        break

    if not user_input:
        continue

    print("\nAgent is thinking...\n")

    # Run the agent with streaming
    try:
        response_text = ""
        async for message in agent.run_stream(task=user_input):
            if hasattr(message, "content") and message.content:
                response_text = message.content

        # Print the final response
        if response_text:
            print(f"Agent: {response_text}\n")
        else:
            print("Agent: I encountered an issue processing your request.\n")

    except Exception as e:
        print(f"Agent: Sorry, I encountered an error: {str(e)}\n")
What's happening:
  • The script prompts you in a loop with You:
  • Autogen passes your input to the model, which decides which Jira tools to call via MCP
  • agent.run_stream(...) yields streaming messages as the agent thinks and calls tools
  • Typing exit, quit, or bye ends the loop

Complete Code

Here's the complete code to get you started with Jira and AutoGen:

python
import asyncio
import os
from dotenv import load_dotenv
from composio import Composio

from autogen_agentchat.agents import AssistantAgent
from autogen_ext.models.openai import OpenAIChatCompletionClient
from autogen_ext.tools.mcp import McpWorkbench, StreamableHttpServerParams

load_dotenv()

async def main():
    # Initialize Composio and create a Jira session
    composio = Composio(api_key=os.getenv("COMPOSIO_API_KEY"))
    session = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["jira"]
    )
    url = session.mcp.url

    # Configure MCP server parameters for Streamable HTTP
    server_params = StreamableHttpServerParams(
        url=url,
        timeout=30.0,
        sse_read_timeout=300.0,
        terminate_on_close=True,
        headers={"x-api-key": os.getenv("COMPOSIO_API_KEY")}
    )

    # Create model client
    model_client = OpenAIChatCompletionClient(
        model="gpt-5",
        api_key=os.getenv("OPENAI_API_KEY")
    )

    # Use McpWorkbench as context manager
    async with McpWorkbench(server_params) as workbench:
        # Create Jira assistant agent with MCP tools
        agent = AssistantAgent(
            name="jira_assistant",
            description="An AI assistant that helps with Jira operations.",
            model_client=model_client,
            workbench=workbench,
            model_client_stream=True,
            max_tool_iterations=10
        )

        print("Chat started! Type 'exit' or 'quit' to end the conversation.\n")
        print("Ask any Jira related question or task to the agent.\n")

        # Conversation loop
        while True:
            user_input = input("You: ").strip()

            if user_input.lower() in ['exit', 'quit', 'bye']:
                print("\nGoodbye!")
                break

            if not user_input:
                continue

            print("\nAgent is thinking...\n")

            # Run the agent with streaming
            try:
                response_text = ""
                async for message in agent.run_stream(task=user_input):
                    if hasattr(message, 'content') and message.content:
                        response_text = message.content

                # Print the final response
                if response_text:
                    print(f"Agent: {response_text}\n")
                else:
                    print("Agent: I encountered an issue processing your request.\n")

            except Exception as e:
                print(f"Agent: Sorry, I encountered an error: {str(e)}\n")

if __name__ == "__main__":
    asyncio.run(main())

Conclusion

You now have an Autogen assistant wired into Jira through Composio's Tool Router and MCP. From here you can:
  • Add more toolkits to the toolkits list, for example notion or hubspot
  • Refine the agent description to point it at specific workflows
  • Wrap this script behind a UI, Slack bot, or internal tool
Once the pattern is clear for Jira, you can reuse the same structure for other MCP-enabled apps with minimal code changes.

How to build Jira MCP Agent with another framework

OpenAI Agents SDK

OpenAI Agents SDK

Use Jira MCP with OpenAI Agents SDK

Claude Agent SDK

Claude Agent SDK

Use Jira MCP with Claude Agent SDK

Google ADK

Google ADK

Use Jira MCP with Google ADK

LangChain

LangChain

Use Jira MCP with LangChain

Vercel AI SDK

Vercel AI SDK

Use Jira MCP with Vercel AI SDK

Mastra AI

Mastra AI

Use Jira MCP with Mastra AI

LlamaIndex

LlamaIndex

Use Jira MCP with LlamaIndex

CrewAI

CrewAI

Use Jira MCP with CrewAI

FAQ

What are the differences in Tool Router MCP and Jira MCP?

With a standalone Jira MCP server, the agents and LLMs can only access a fixed set of Jira tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Jira and many other apps based on the task at hand, all through a single MCP endpoint.

Can I use Tool Router MCP with Autogen?

Yes, you can. Autogen fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Jira tools.

Can I manage the permissions and scopes for Jira while using Tool Router?

Yes, absolutely. You can configure which Jira scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

How safe is my data with Composio Tool Router?

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Jira data and credentials are handled as safely as possible.

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