How to integrate Jira MCP with Autogen

Connect Autogen to Jira MCP. Create a new bug in project alpha, assign issue jira-102 to sarah lee, and more using natural language, with authentication handled for you.

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Jira is Atlassian’s platform for bug tracking, issue tracking, and agile project management. It helps teams organize work, prioritize tasks, and deliver projects efficiently.

127 Tools17 Triggers

Introduction

This guide walks you through connecting Jira to AutoGen using the Composio tool router. By the end, you'll have a working Jira agent that can create and update issues, assign work, manage sprints and boards, log work, and search projects with JQL through natural language commands.

This guide will help you understand how to give your AutoGen agent real control over a Jira account through Composio's Jira MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

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TL;DR

Here's what you'll learn:
  • Get and set up your OpenAI and Composio API keys
  • Install the required dependencies for Autogen and Composio
  • Initialize Composio and create a Tool Router session for Jira
  • Wire that MCP URL into Autogen using McpWorkbench and StreamableHttpServerParams
  • Configure an Autogen AssistantAgent that can call Jira tools
  • Run a live chat loop where you ask the agent to perform Jira operations

What is AutoGen?

Autogen is a framework for building multi-agent conversational AI systems from Microsoft. It enables you to create agents that can collaborate, use tools, and maintain complex workflows.

Key features include:

  • Multi-Agent Systems: Build collaborative agent workflows
  • MCP Workbench: Native support for Model Context Protocol tools
  • Streaming HTTP: Connect to external services through streamable HTTP
  • AssistantAgent: Pre-built agent class for tool-using assistants

What is the Jira MCP server, and what's possible with it?

The Jira MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Jira account. It provides structured and secure access to your issues, projects, boards, sprints, and teams, so your agent can create issues, update work, plan sprints, manage projects, and coordinate users on your behalf.

  • Issue creation and updates: Have your agent create individual or bulk issues, edit their fields, assign them to teammates, link related work, or delete outdated issues.
  • Comments, attachments, and worklogs: Let the agent add rich text comments, upload or retrieve attachments, record worklogs, and add watchers to issues.
  • Sprint and board planning: Direct your agent to create Scrum or Kanban boards, set up sprints with goals and dates, and create release versions for project milestones.
  • Project setup and oversight: Instruct your agent to list or inspect projects, create new projects from available templates, review dashboards, and retrieve saved filters.
  • Team and access coordination: Have your agent review users, groups, roles, and permissions, then add users to groups or assign people and groups to project roles.

What is the Composio tool router, and how does it fit here?

What is Composio SDK?

Composio's Composio SDK helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Composio SDK

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Composio SDK works

The Composio SDK follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Step by step08 STEPS
1

Prerequisites

You will need:

  • A Composio API key
  • An OpenAI API key (used by Autogen's OpenAIChatCompletionClient)
  • A Jira account you can connect to Composio
  • Some basic familiarity with Autogen and Python async
2

Getting API Keys for OpenAI and Composio

OpenAI API Key
  • Go to the OpenAI dashboard and create an API key. You'll need credits to use the models, or you can connect to another model provider.
  • Keep the API key safe.
Composio API Key
  • Log in to the Composio dashboard.
  • Navigate to your API settings and generate a new API key.
  • Store this key securely as you'll need it for authentication.
3

Install dependencies

bash
pip install composio python-dotenv
pip install autogen-agentchat autogen-ext-openai autogen-ext-tools

Install Composio, Autogen extensions, and dotenv.

What's happening:

  • composio connects your agent to Jira via MCP
  • autogen-agentchat provides the AssistantAgent class
  • autogen-ext-openai provides the OpenAI model client
  • autogen-ext-tools provides MCP workbench support

4

Set up environment variables

bash
COMPOSIO_API_KEY=your-composio-api-key
OPENAI_API_KEY=your-openai-api-key
USER_ID=your-user-identifier@example.com

Create a .env file in your project folder.

What's happening:

  • COMPOSIO_API_KEY is required to talk to Composio
  • OPENAI_API_KEY is used by Autogen's OpenAI client
  • USER_ID is how Composio identifies which user's Jira connections to use
5

Import dependencies and create Tool Router session

python
import asyncio
import os
from dotenv import load_dotenv
from composio import Composio

from autogen_agentchat.agents import AssistantAgent
from autogen_ext.models.openai import OpenAIChatCompletionClient
from autogen_ext.tools.mcp import McpWorkbench, StreamableHttpServerParams

load_dotenv()

async def main():
    # Initialize Composio and create a Jira session
    composio = Composio(api_key=os.getenv("COMPOSIO_API_KEY"))
    session = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["jira"]
    )
    url = session.mcp.url
What's happening:
  • load_dotenv() reads your .env file
  • Composio(api_key=...) initializes the SDK
  • create(...) creates a Tool Router session that exposes Jira tools
  • session.mcp.url is the MCP endpoint that Autogen will connect to
6

Configure MCP parameters for Autogen

python
# Configure MCP server parameters for Streamable HTTP
server_params = StreamableHttpServerParams(
    url=url,
    timeout=30.0,
    sse_read_timeout=300.0,
    terminate_on_close=True,
    headers={"x-api-key": os.getenv("COMPOSIO_API_KEY")}
)

Autogen expects parameters describing how to talk to the MCP server. That is what StreamableHttpServerParams is for.

What's happening:

  • url points to the Tool Router MCP endpoint from Composio
  • timeout is the HTTP timeout for requests
  • sse_read_timeout controls how long to wait when streaming responses
  • terminate_on_close=True cleans up the MCP server process when the workbench is closed
7

Create the model client and agent

python
# Create model client
model_client = OpenAIChatCompletionClient(
    model="gpt-5",
    api_key=os.getenv("OPENAI_API_KEY")
)

# Use McpWorkbench as context manager
async with McpWorkbench(server_params) as workbench:
    # Create Jira assistant agent with MCP tools
    agent = AssistantAgent(
        name="jira_assistant",
        description="An AI assistant that helps with Jira operations.",
        model_client=model_client,
        workbench=workbench,
        model_client_stream=True,
        max_tool_iterations=10
    )

What's happening:

  • OpenAIChatCompletionClient wraps the OpenAI model for Autogen
  • McpWorkbench connects the agent to the MCP tools
  • AssistantAgent is configured with the Jira tools from the workbench
8

Run the interactive chat loop

python
print("Chat started! Type 'exit' or 'quit' to end the conversation.\n")
print("Ask any Jira related question or task to the agent.\n")

# Conversation loop
while True:
    user_input = input("You: ").strip()

    if user_input.lower() in ["exit", "quit", "bye"]:
        print("\nGoodbye!")
        break

    if not user_input:
        continue

    print("\nAgent is thinking...\n")

    # Run the agent with streaming
    try:
        response_text = ""
        async for message in agent.run_stream(task=user_input):
            if hasattr(message, "content") and message.content:
                response_text = message.content

        # Print the final response
        if response_text:
            print(f"Agent: {response_text}\n")
        else:
            print("Agent: I encountered an issue processing your request.\n")

    except Exception as e:
        print(f"Agent: Sorry, I encountered an error: {str(e)}\n")
What's happening:
  • The script prompts you in a loop with You:
  • Autogen passes your input to the model, which decides which Jira tools to call via MCP
  • agent.run_stream(...) yields streaming messages as the agent thinks and calls tools
  • Typing exit, quit, or bye ends the loop

Complete Code

Here's the complete code to get you started with Jira and AutoGen:

python
import asyncio
import os
from dotenv import load_dotenv
from composio import Composio

from autogen_agentchat.agents import AssistantAgent
from autogen_ext.models.openai import OpenAIChatCompletionClient
from autogen_ext.tools.mcp import McpWorkbench, StreamableHttpServerParams

load_dotenv()

async def main():
    # Initialize Composio and create a Jira session
    composio = Composio(api_key=os.getenv("COMPOSIO_API_KEY"))
    session = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["jira"]
    )
    url = session.mcp.url

    # Configure MCP server parameters for Streamable HTTP
    server_params = StreamableHttpServerParams(
        url=url,
        timeout=30.0,
        sse_read_timeout=300.0,
        terminate_on_close=True,
        headers={"x-api-key": os.getenv("COMPOSIO_API_KEY")}
    )

    # Create model client
    model_client = OpenAIChatCompletionClient(
        model="gpt-5",
        api_key=os.getenv("OPENAI_API_KEY")
    )

    # Use McpWorkbench as context manager
    async with McpWorkbench(server_params) as workbench:
        # Create Jira assistant agent with MCP tools
        agent = AssistantAgent(
            name="jira_assistant",
            description="An AI assistant that helps with Jira operations.",
            model_client=model_client,
            workbench=workbench,
            model_client_stream=True,
            max_tool_iterations=10
        )

        print("Chat started! Type 'exit' or 'quit' to end the conversation.\n")
        print("Ask any Jira related question or task to the agent.\n")

        # Conversation loop
        while True:
            user_input = input("You: ").strip()

            if user_input.lower() in ['exit', 'quit', 'bye']:
                print("\nGoodbye!")
                break

            if not user_input:
                continue

            print("\nAgent is thinking...\n")

            # Run the agent with streaming
            try:
                response_text = ""
                async for message in agent.run_stream(task=user_input):
                    if hasattr(message, 'content') and message.content:
                        response_text = message.content

                # Print the final response
                if response_text:
                    print(f"Agent: {response_text}\n")
                else:
                    print("Agent: I encountered an issue processing your request.\n")

            except Exception as e:
                print(f"Agent: Sorry, I encountered an error: {str(e)}\n")

if __name__ == "__main__":
    asyncio.run(main())

Conclusion

You now have an Autogen assistant wired into Jira through Composio's Tool Router and MCP. From here you can:
  • Add more toolkits to the toolkits list, for example notion or hubspot
  • Refine the agent description to point it at specific workflows
  • Wrap this script behind a UI, Slack bot, or internal tool
Once the pattern is clear for Jira, you can reuse the same structure for other MCP-enabled apps with minimal code changes.
TOOLS & TRIGGERS

Supported Tools and Triggers

Every Jira action and event your agent gets out of the box.

Add Attachment

Uploads and attaches a file to a Jira issue.

Add Comment

Adds a comment using Atlassian Document Format (ADF) for rich text to an existing Jira issue.

Add Field to Screen Tab

Adds a Jira field to a screen tab.

Add Users to Project Role

Adds users or groups to a Jira project role.

Add User to Group

Adds a user to a Jira group.

Add Watcher to Issue

Adds a user to an issue's watcher list by account ID.

Add Worklog

Adds a worklog entry to a Jira issue to record time spent.

Analyse Jira Expression

Analyses Jira expressions for syntax validation, type checking, and complexity analysis.

Assign Issue

Assigns a Jira issue to a user, default assignee, or unassigns; supports email/name lookup.

Bulk Create Issues

Creates multiple Jira issues (up to 50 per call) with full feature support including markdown, assignee resolution, and priority handling.

Bulk Move Issues

Submits an asynchronous bulk move of Jira issues using destination project, issue type, and optional parent mappings.

Check User Permissions

Check user permissions for global and project-level operations in Jira.

Create Board

Creates a new Jira board (kanban, scrum, or agility) with optional filter and location configuration.

Create Component

Create a component in a Jira project.

Create Custom Field Context

Create a project and issue-type context for a Jira custom field.

Create Filter

Create a Jira saved filter with a required name and optional JQL query.

Create Group

Creates a new group in Jira with the specified name.

Create Issue

Creates a Jira issue in a specified project with standard and additional custom fields, including fields required by the project.

Link Issues

Links two Jira issues using a specified link type with optional comment.

Create Issue Type

Create a global Jira issue type.

Get JQL Autocomplete Data

Retrieves JQL autocomplete reference data including reserved words, field names, and function names.

Create Project

Creates a new Jira project with required lead, template, and type configuration.

Create Screen

Create a Jira screen with a default field tab.

Create Screen Scheme

Create a Jira screen scheme with optional operation-specific screens.

Create Sprint

Creates a new sprint on a Jira board with optional start/end dates and goal.

Create Version

Creates a new version for releases or milestones in a Jira project.

Delete Attachment

Permanently deletes an attachment from Jira by its ID.

Delete Comment

Deletes a specific comment from a Jira issue using its ID and the issue's ID/key; requires user permission to delete comments on the issue.

Delete Issue

Permanently deletes a Jira issue by ID or key, optionally deleting its subtasks as well.

Delete Issue Link

Permanently deletes a link between two Jira issues by link identifier.

Delete Statuses

Deletes one to fifty Jira workflow statuses by identifier.

Delete Version

Deletes a Jira version and optionally reassigns its issues.

Delete Worklog

Deletes a worklog from a Jira issue with estimate adjustment options.

Edit Issue

Updates a Jira issue with field values and operations, with direct field parameters taking precedence over fields.

Evaluate Jira Expression

Tool to evaluate Jira expressions using the enhanced search API.

Bulk Fetch Issues

Tool to bulk fetch multiple Jira issues by their IDs or keys (max 100 per call).

Find Users 2

Searches Jira users by query string, account ID, or property, returning one page of matches.

Find Users For Picker

Find users for picker components by matching query against user attributes like display name and email.

Find Users With Permissions

Find users who hold every requested permission for a Jira issue or project.

Get All Groups

Retrieves a page of groups from the Jira instance.

Get All Issue Type Schemes

Retrieves all Jira issue type schemes with optional filtering and pagination.

Get all projects

Retrieves a page of visible Jira projects with server-side filtering and pagination.

Get Issue Statuses

Retrieves all issue statuses associated with workflows from Jira.

Get All Users

Retrieves all users from the Jira instance including active, inactive, app accounts, and system accounts, with pagination support.

Get Attachment

Retrieves the binary content of a Jira attachment by ID.

Get Attachment Meta

Tool to retrieve Jira attachment settings including upload limits and enabled status.

Get Comment

Retrieves a specific comment by ID from a Jira issue with optional expansions.

Get Component

Tool to retrieve components from Jira projects with search and filtering.

Get Create Field Metadata for Issue Type

Tool to retrieve field metadata for a specific issue type in a project.

Get Current User

Retrieves detailed information about the currently authenticated Jira user.

Get Dashboard Item Properties

List property keys for a dashboard item or retrieve one property's value.

Get Dashboards

Tool to list and search Jira dashboards visible to the current user.

Get Favorite Filters

Tool to retrieve favorite filters for the current user.

Get fields

Retrieves Jira issue field metadata to discover field IDs and names, with optional custom-field and project-scope filtering or creation fields for a project and issue type.

Get custom fields paginated

Tool to retrieve Jira fields in pages.

Get Filter

Retrieves a specific Jira saved filter by ID, including its JQL and sharing metadata, to reuse in subsequent searches.

Get Group

Retrieves details of a specific Jira group by name or ID.

Get Service Management Info

Retrieves runtime information for the Jira Service Management instance.

Get Issue

Retrieves a Jira issue by ID or key with customizable fields and expansions.

Get Issue Changelogs

Return one oldest-first page of an issue's complete change history.

Get Issue Edit Meta

Tool to retrieve editable fields for a Jira issue.

Get Issue Link Types

Retrieves all configured issue link types from Jira.

Get issue picker

Tool to get issue picker suggestions from Jira.

Get Issue Property

Retrieves a custom property from a Jira issue by key.

Get Issue Resolutions

Retrieves Jira issue resolution types.

Get Issue Type

Retrieves one Jira issue type by its unique ID.

Get issue types

Retrieves all Jira issue types available to the user using the modern API v3 endpoint; results vary based on 'Administer Jira' global or 'Browse projects' project permissions.

Get Issue Watchers

Retrieves watcher information for a Jira issue, subject to Jira permissions.

Get JQL autocomplete reference data

Tool to retrieve JQL autocomplete reference data.

Get JQL autocomplete suggestions

Tool to get JQL field auto-complete suggestions.

Get My Permissions

Tool to retrieve the user's permissions in Jira.

Get User Locale Preference

Tool to retrieve the locale preference of the currently authenticated Jira user.

Get Permissions

Tool to retrieve all available Jira permissions.

Get Permitted Projects

Tool to retrieve projects where the current user has specific permissions.

Get Project

Retrieves details of a Jira project by its ID or key.

Get Project Permission Scheme

Return the permission scheme assigned to a Jira project.

Get Project Roles

Retrieves all available roles for a Jira project.

Get Project Templates

Lists project template keys from a fixed catalog, optionally filtered by project type.

Get Project Type

Retrieves detailed information about a specific Jira project type by its key.

Get Project Versions

Retrieves all versions for a Jira project with optional expansion.

Get Recent Projects

Retrieves a list of projects recently accessed by the authenticated user.

Get Issue Remote Links

Retrieves links from a Jira issue to external resources.

Get Server Info

Tool to retrieve Jira instance server information.

Get Service Desk Request Type Fields

Tool to retrieve JSM request type field metadata for filling out portal requests.

Get Sprint

Retrieves detailed information about a specific sprint by its ID.

Get System Avatars

Tool to retrieve all system avatars for a specific type (issuetype, project, user, or priority).

Get Transitions

Retrieves available workflow transitions for a Jira issue.

Get Universal Avatar Type Owner

Tool to retrieve all avatars (system and custom) for a specific type and entity in Jira.

Get Universal Avatar View Type

Tool to retrieve the default avatar image for a specific type (project, issuetype, or priority) from Jira.

Get User Groups

Retrieves all groups for a specific Jira user by account ID.

Get Avatar Image

Tool to retrieve a specific avatar image by type and ID from Jira.

Get Issue Votes

Fetches voting details for a Jira issue; requires voting to be enabled in Jira's general settings.

Get Worklogs

Retrieves worklogs for a specified Jira issue.

Get Worklogs By IDs

Retrieve full worklog records for a list of Jira worklog IDs.

List Assignable Users

Search a page of users eligible for assignment in a Jira project or issue, optionally evaluating a workflow transition.

List Boards

Retrieves paginated Jira boards with filtering and sorting options.

List Comments by IDs

Tool to retrieve multiple comments by their IDs in a single request.

List Custom Field Context Default Values

Return one page of custom field defaults grouped by context and issue type.

List Custom Field Context Issue Type Mappings

Return one page of issue type mappings for a Jira custom field's contexts.

List Custom Field Context Options

Return one page of options configured for a custom field context.

List Custom Field Context Project Mappings

Return one page of project mappings for a Jira custom field's contexts.

List Custom Field Contexts

Return one page of contexts for a Jira custom field.

List Dashboard Gadgets

Lists gadgets on a Jira dashboard, optionally filtered by type, URI, or ID.

List Field Scheme Fields

List fields via an experimental endpoint requiring Jira field-schemes beta enrollment.

List Jira Filters

Tool to search and list Jira saved filters (saved searches) visible to the current user.

List Group Members

Return one page of users belonging to a Jira group.

List Groups (Picker)

Tool to search and list groups using Jira's picker endpoint.

List Issue Comments

Retrieves paginated comments from a Jira issue with optional ordering.

List Issue Forms

List basic metadata for forms attached to a Jira issue.

List Issue Property Keys

Lists the keys and URLs of properties defined on a Jira issue.

List Project Types

Retrieves all Jira project types available in the instance.

List Sprints

Retrieves paginated sprints from a Jira board with optional state filtering.

List Updated Worklogs

Return one updated-worklog checkpoint page.

Move Issues to Sprint

Moves one or more Jira issues to a specified active sprint.

Parse JQL Queries

Parse and validate JQL queries, returning their abstract syntax tree structure along with any errors or warnings.

Remove User from Group

Removes a user from a Jira group.

Remove User from Project Role

Removes a user or group from a project role.

Remove Watcher from Issue

Removes a user from an issue's watcher list by account ID.

Search Approximate Count

Count issues matching a JQL query using approximate count endpoint.

Search Dashboards

Tool to search for Jira dashboards with filtering, sorting, and pagination support.

Search Issues Using JQL (GET)

Searches Jira issues using JQL with token pagination and field selection.

Search issues

Searches Jira issues using structured filters or raw JQL, defaulting to issues updated in the last 30 days when no criteria are supplied.

Send Notification for Issue

Sends a customized email notification for a Jira issue.

Set Issue Property

Sets a named JSON property on a Jira issue.

Transition Issue

Transitions a Jira issue to a different workflow state, with support for transition name lookup and user assignment by email.

Update Comment

Updates an existing Jira comment by replacing its text content, with optional visibility restrictions.

Who Am I

Returns Jira connection identity information.

FAQ

Frequently asked questions

With a standalone Jira MCP server, the agents and LLMs can only access a fixed set of Jira tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Jira and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Autogen fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Jira tools.

Yes, absolutely. You can configure which Jira scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Jira data and credentials are handled as safely as possible.

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