How to integrate Pinecone MCP with Claude Code

Manage your Pinecone directly from Claude Code with zero worries about OAuth hassles, API-breaking issues, or reliability and security concerns. You can do this in two different ways: Via Composio Connect - Direct and easiest approach Via Composio SDK - Programmatic approach with more control

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Pinecone is a fully managed vector database for high-performance AI memory and search. It lets you scale semantic search and retrieval without infrastructure overhead.

30 Tools

Introduction

Manage your Pinecone directly from Claude Code with zero worries about OAuth hassles, API-breaking issues, or reliability and security concerns.

You can do this in two different ways:

  1. Via Composio Connect - Direct and easiest approach
  2. Via Composio SDK - Programmatic approach with more control

Also integrate Pinecone with

Why use Composio?

  • Only one MCP URL to connect multiple apps with Claude Code with zero auth hassles.
  • Programmatic tool calling allows LLMs to write its code in a remote workbench to handle complex tool chaining. Reduces to-and-fro with LLMs for frequent tool calling.
  • Handling Large tool responses out of LLM context to minimize context rot.
  • Dynamic just-in-time access to 20,000 tools across 1000+ other Apps for cross-app workflows. It loads the tools you need, so LLMs aren't overwhelmed by tools you don't need.

Connecting Pinecone to Claude Code using Composio

1. Add the Composio MCP to Claude

Terminal

2. Start Claude Code

bash
claude

3. Open your MCP list

bash
/mcp

4. Select Composio and click on Authenticate

Select Composio and click Authenticate

5. This will redirect you to the Composio OAuth page. Complete the flow by authorizing Composio and you're all set.

Composio OAuth authorization page
Composio authorization complete
Ask Claude to connect to your account and authenticate via the link

What is the Pinecone MCP server, and what's possible with it?

The Pinecone MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Pinecone account. It provides structured and secure access so your agent can perform Pinecone operations on your behalf.

Connecting Pinecone via Composio SDK

Composio SDK is the underlying tech that powers Rube. It's a universal gateway that does everything Rube does but with much more programmatic control. You can programmatically generate an MCP URL with the app you need (here Pinecone) for even more tool search precision. It's secure and reliable.

How the Composio SDK works

The Composio SDK follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Step by step10 STEPS
1

Prerequisites

Before starting, make sure you have:
  • Claude Pro, Max, or API billing enabled Anthropic account
  • Composio API Key
  • A Pinecone account
  • Basic knowledge of Python or TypeScript
2

Install Claude Code

bash
# macOS, Linux, WSL
curl -fsSL https://claude.ai/install.sh | bash

# Windows PowerShell
irm https://claude.ai/install.ps1 | iex

# Windows CMD
curl -fsSL https://claude.ai/install.cmd -o install.cmd && install.cmd && del install.cmd

To install Claude Code, use one of the following methods based on your operating system:

3

Set up Claude Code

bash
cd your-project-folder
claude

Open a terminal, go to your project folder, and start Claude Code:

  • Claude Code will open in your terminal
  • Follow the prompts to sign in with your Anthropic account
  • Complete the authentication flow
  • Once authenticated, you can start using Claude Code
Claude Code initial setup showing sign-in prompt
Claude Code terminal after successful login
4

Set up environment variables

bash
COMPOSIO_API_KEY=your_composio_api_key_here
USER_ID=your_user_id_here

Create a .env file in your project root with the following variables:

  • COMPOSIO_API_KEY authenticates with Composio (get it from Composio dashboard)
  • USER_ID identifies the user for session management (use any unique identifier)
5

Install Composio library

npm install @composio/core dotenv

Install the Composio TypeScript library to create MCP sessions.

  • @composio/core provides the core Composio functionality
  • dotenv loads environment variables from your .env file
6

Generate Composio MCP URL

import 'dotenv/config';
import { Composio } from '@composio/core';

const { COMPOSIO_API_KEY, USER_ID } = process.env;

if (!COMPOSIO_API_KEY || !USER_ID) {
  throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
}

const composioClient = new Composio({ apiKey: COMPOSIO_API_KEY });

const composioSession = await composioClient.create(USER_ID, {
  toolkits: ['pinecone'],
});

const composioMcpUrl = composioSession?.mcp.url;

console.log(`MCP URL: ${composioMcpUrl}`);
console.log(`\nUse this command to add to Claude Code:`);
console.log(`claude mcp add --transport http pinecone-composio "${composioMcpUrl}" --headers "X-API-Key:${COMPOSIO_API_KEY}"`);

Create a script to generate a Composio MCP URL for Pinecone. This URL will be used to connect Claude Code to Pinecone.

What's happening

  • We import the Composio client and load environment variables
  • Create a Composio instance with your API key
  • Call create() to create a Tool Router session for Pinecone
  • The returned mcp.url is the MCP server URL that Claude Code will use
  • The script prints this URL so you can copy it
7

Run the script and copy the MCP URL

node --loader ts-node/esm generate_mcp_url.ts
# or if using tsx
tsx generate_mcp_url.ts

Run your TypeScript script to generate the MCP URL.

  • The script connects to Composio and creates a Tool Router session
  • It prints the MCP URL and the exact command you need to run
  • Copy the entire claude mcp add command from the output
8

Add Pinecone MCP to Claude Code

bash
claude mcp add --transport http pinecone-composio "YOUR_MCP_URL_HERE" --headers "X-API-Key:YOUR_COMPOSIO_API_KEY"

# Then restart Claude Code
exit
claude

In your terminal, add the MCP server using the command from the previous step. The command format is:

  • claude mcp add registers a new MCP server with Claude Code
  • --transport http specifies that this is an HTTP-based MCP server
  • The server name (pinecone-composio) is how you'll reference it
  • The URL points to your Composio Tool Router session
  • --headers includes your Composio API key for authentication

After running the command, close the current Claude Code session and start a new one for the changes to take effect.

9

Verify the installation

bash
claude mcp list

Check that your Pinecone MCP server is properly configured.

  • This command lists all MCP servers registered with Claude Code
  • You should see your pinecone-composio entry in the list
  • This confirms that Claude Code can now access Pinecone tools

If everything is wired up, you should see your pinecone-composio entry listed:

Claude Code MCP list showing the toolkit MCP server
10

Authenticate Pinecone

The first time you try to use Pinecone tools, you'll be prompted to authenticate.

  • Claude Code will detect that you need to authenticate with Pinecone
  • It will show you an authentication link
  • Open the link in your browser (or copy/paste it)
  • Complete the Pinecone authorization flow
  • Return to the terminal and start using Pinecone through Claude Code

Once authenticated, you can ask Claude Code to perform Pinecone operations in natural language. For example:

  • "Query all vectors similar to user question"
  • "Upsert document embeddings into a namespace"
  • "Delete vectors from the archive index"

Complete Code

Here's the complete code to get you started with Pinecone and Claude Code:

import 'dotenv/config';
import { Composio } from '@composio/core';

const { COMPOSIO_API_KEY, USER_ID } = process.env;

if (!COMPOSIO_API_KEY || !USER_ID) {
  throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
}

const composioClient = new Composio({ apiKey: COMPOSIO_API_KEY });

const composioSession = await composioClient.create(USER_ID, {
  toolkits: ['pinecone'],
});

const composioMcpUrl = composioSession?.mcp.url;

console.log(`MCP URL: ${composioMcpUrl}`);
console.log(`\nUse this command to add to Claude Code:`);
console.log(`claude mcp add --transport http pinecone-composio "${composioMcpUrl}" --headers "X-API-Key:${COMPOSIO_API_KEY}"`);

Conclusion

You've successfully integrated Pinecone with Claude Code using Composio's MCP server. Now you can interact with Pinecone directly from your terminal using natural language commands.

Key features of this setup:

  • Terminal-native experience without switching contexts
  • Natural language commands for Pinecone operations
  • Secure authentication through Composio's managed MCP
  • Tool Router for dynamic tool discovery and execution

Next steps:

  • Try asking Claude Code to perform various Pinecone operations
  • Add more toolkits to your Tool Router session for multi-app workflows
  • Integrate this setup into your development workflow for increased productivity

You can extend this by adding more toolkits, implementing custom workflows, or building automation scripts that leverage Claude Code's capabilities.

TOOLS

Supported Tools

Every Pinecone action and event your agent gets out of the box.

Cancel Bulk Import

Tool to cancel a bulk import operation in Pinecone.

Configure Index

Tool to configure an existing Pinecone index, including pod type, replicas, deletion protection, and tags.

Create Backup

Tool to create a backup of a Pinecone index for disaster recovery and version control.

Create Index

Tool to create a Pinecone index with specified configuration.

Create Index with Embedding Model

Tool to create a Pinecone index with integrated embedding model for automatic vectorization.

Create Index from Backup

Tool to create an index from a backup.

Create Namespace

Tool to create a namespace within a serverless Pinecone index.

Delete Index

Tool to permanently delete a Pinecone index.

Delete Namespace

Tool to permanently delete a namespace from a serverless index.

Describe Backup

Tool to retrieve detailed information about a specific backup.

Describe Bulk Import

Tool to describe a specific bulk import operation in Pinecone.

Describe Index Stats

Tool to get index statistics including vector count per namespace, dimensions, and fullness.

Describe Restore Job

Tool to get detailed information about a specific restore job in Pinecone.

Generate Embeddings

Tool to generate vector embeddings for input text using Pinecone's hosted embedding models.

Get Model Information

Tool to retrieve detailed information about a specific model hosted by Pinecone.

List Bulk Imports

Tool to list all recent and ongoing bulk import operations in Pinecone.

List Collections

Tool to list all collections in a Pinecone project (pod-based indexes only).

List Index Backups

Tool to list all backups for a specific Pinecone index.

List Indexes

Tool to list all indexes in a Pinecone project.

List Available Models

Tool to list all available embedding and reranking models hosted by Pinecone.

List Namespaces

Tool to list all namespaces in a serverless Pinecone index.

List Project Backups

Tool to list all backups for indexes in a Pinecone project.

List Restore Jobs

Tool to list all restore jobs for a project with pagination support.

List Vectors

Tool to list vector IDs in a Pinecone serverless index.

Query Vectors

Tool to perform semantic search within a Pinecone index using a query vector.

Rerank Documents

Tool to rerank documents by semantic relevance to a query.

Search Records in Namespace

Tool to search records within a Pinecone namespace using text, vector, or ID query.

Start Bulk Import

Tool to start an asynchronous bulk import of vectors from object storage (S3, GCS, or Azure Blob Storage) into a Pinecone index.

Update Vector

Tool to update a vector in Pinecone by ID.

Upsert Records to Namespace

Tool to upsert text records into a Pinecone namespace.

FAQ

Frequently asked questions

With a standalone Pinecone MCP server, the agents and LLMs can only access a fixed set of Pinecone tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Pinecone and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Claude Code fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Pinecone tools.

Yes, absolutely. You can configure which Pinecone scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Pinecone data and credentials are handled as safely as possible.

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