How to integrate Pinecone MCP with Claude Code

GET STARTED FOR FREE
Framework Integration Gradient
Pinecone Logo
Claude Code Logo
divider

Introduction

Manage your Pinecone directly from Claude Code with zero worries about OAuth hassles, API-breaking issues, or reliability and security concerns.

You can do this in two different ways:

  1. Via Rube - Direct and easiest approach
  2. Via Composio SDK - Programmatic approach with more control

Why Rube?

Rube is a universal MCP server with access to 850+ SaaS apps. It ensures just-in-time tool loading so Claude can access the tools it needs, a remote workbench for programmatic tool calling and handling large tool responses out of the LLM context window, ensuring the LLM context window remains clean.

Connect Pinecone to Claude Code with Rube

1. Get the MCP URL

Copy and paste the below command in Claude Code to add Rube MCP.

Terminal

2. Authenticate Rube

Run /mcp to view Rube

bash
/mcp
Run /mcp to view Rube in Claude Code
Click on Rube to authenticate
Authentication flow complete

3. Ensure it's connected

Run /mcp again to verify the connection. Now, do whatever you want with Claude Code and Pinecone.

Rube connected successfully

Supported Tools & Triggers

Tools
Cancel Bulk ImportTool to cancel a bulk import operation in Pinecone.
Configure IndexTool to configure an existing Pinecone index, including pod type, replicas, deletion protection, and tags.
Create BackupTool to create a backup of a Pinecone index for disaster recovery and version control.
Create IndexTool to create a Pinecone index with specified configuration.
Create Index with Embedding ModelTool to create a Pinecone index with integrated embedding model for automatic vectorization.
Create Index from BackupTool to create an index from a backup.
Create NamespaceTool to create a namespace within a serverless Pinecone index.
Delete IndexTool to permanently delete a Pinecone index.
Delete NamespaceTool to permanently delete a namespace from a serverless index.
Describe BackupTool to retrieve detailed information about a specific backup.
Describe Bulk ImportTool to describe a specific bulk import operation in Pinecone.
Describe Index StatsTool to get index statistics including vector count per namespace, dimensions, and fullness.
Describe Restore JobTool to get detailed information about a specific restore job in Pinecone.
Generate EmbeddingsTool to generate vector embeddings for input text using Pinecone's hosted embedding models.
Get Model InformationTool to retrieve detailed information about a specific model hosted by Pinecone.
List Bulk ImportsTool to list all recent and ongoing bulk import operations in Pinecone.
List CollectionsTool to list all collections in a Pinecone project (pod-based indexes only).
List Index BackupsTool to list all backups for a specific Pinecone index.
List IndexesTool to list all indexes in a Pinecone project.
List Available ModelsTool to list all available embedding and reranking models hosted by Pinecone.
List NamespacesTool to list all namespaces in a serverless Pinecone index.
List Project BackupsTool to list all backups for indexes in a Pinecone project.
List Restore JobsTool to list all restore jobs for a project with pagination support.
List VectorsTool to list vector IDs in a Pinecone serverless index.
Query VectorsTool to perform semantic search within a Pinecone index using a query vector.
Rerank DocumentsTool to rerank documents by semantic relevance to a query.
Search Records in NamespaceTool to search records within a Pinecone namespace using text, vector, or ID query.
Start Bulk ImportTool to start an asynchronous bulk import of vectors from object storage (S3, GCS, or Azure Blob Storage) into a Pinecone index.
Update VectorTool to update a vector in Pinecone by ID.
Upsert Records to NamespaceTool to upsert text records into a Pinecone namespace.

What is the Pinecone MCP server, and what's possible with it?

The Pinecone MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Pinecone account. It provides structured and secure access so your agent can perform Pinecone operations on your behalf.

Connecting Pinecone via Tool Router

Tool Router is the underlying tech that powers Rube. It's a universal gateway that does everything Rube does but with much more programmatic control. You can programmatically generate an MCP URL with the app you need (here Pinecone) for even more tool search precision. It's secure and reliable.

How the Tool Router works

The Tool Router follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Prerequisites

Before starting, make sure you have:
  • Claude Pro, Max, or API billing enabled Anthropic account
  • Composio API Key
  • A Pinecone account
  • Basic knowledge of Python or TypeScript

Install Claude Code

bash
# macOS, Linux, WSL
curl -fsSL https://claude.ai/install.sh | bash

# Windows PowerShell
irm https://claude.ai/install.ps1 | iex

# Windows CMD
curl -fsSL https://claude.ai/install.cmd -o install.cmd && install.cmd && del install.cmd

To install Claude Code, use one of the following methods based on your operating system:

Set up Claude Code

bash
cd your-project-folder
claude

Open a terminal, go to your project folder, and start Claude Code:

  • Claude Code will open in your terminal
  • Follow the prompts to sign in with your Anthropic account
  • Complete the authentication flow
  • Once authenticated, you can start using Claude Code
Claude Code initial setup showing sign-in prompt
Claude Code terminal after successful login

Set up environment variables

bash
COMPOSIO_API_KEY=your_composio_api_key_here
USER_ID=your_user_id_here

Create a .env file in your project root with the following variables:

  • COMPOSIO_API_KEY authenticates with Composio (get it from Composio dashboard)
  • USER_ID identifies the user for session management (use any unique identifier)

Install Composio library

pip install composio-core python-dotenv

Install the Composio Python library to create MCP sessions.

  • composio-core provides the core Composio functionality
  • python-dotenv loads environment variables from your .env file

Generate Composio MCP URL

import os
from composio import Composio
from dotenv import load_dotenv

load_dotenv()

COMPOSIO_API_KEY = os.getenv("COMPOSIO_API_KEY")
USER_ID = os.getenv("USER_ID")

composio_client = Composio(api_key=COMPOSIO_API_KEY)

composio_session = composio_client.create(
    user_id=USER_ID,
    toolkits=["pinecone"],
)

COMPOSIO_MCP_URL = composio_session.mcp.url

print(f"MCP URL: {COMPOSIO_MCP_URL}")
print(f"\nUse this command to add to Claude Code:")
print(f'claude mcp add --transport http pinecone-composio "{COMPOSIO_MCP_URL}" --headers "X-API-Key:{COMPOSIO_API_KEY}"')

Create a script to generate a Composio MCP URL for Pinecone. This URL will be used to connect Claude Code to Pinecone.

What's happening:
  • We import the Composio client and load environment variables
  • Create a Composio instance with your API key
  • Call create() to create a Tool Router session for Pinecone
  • The returned mcp.url is the MCP server URL that Claude Code will use
  • The script prints this URL so you can copy it

Run the script and copy the MCP URL

python generate_mcp_url.py

Run your Python script to generate the MCP URL.

  • The script connects to Composio and creates a Tool Router session
  • It prints the MCP URL and the exact command you need to run
  • Copy the entire claude mcp add command from the output

Add Pinecone MCP to Claude Code

bash
claude mcp add --transport http pinecone-composio "YOUR_MCP_URL_HERE" --headers "X-API-Key:YOUR_COMPOSIO_API_KEY"

# Then restart Claude Code
exit
claude

In your terminal, add the MCP server using the command from the previous step. The command format is:

  • claude mcp add registers a new MCP server with Claude Code
  • --transport http specifies that this is an HTTP-based MCP server
  • The server name (pinecone-composio) is how you'll reference it
  • The URL points to your Composio Tool Router session
  • --headers includes your Composio API key for authentication

After running the command, close the current Claude Code session and start a new one for the changes to take effect.

Verify the installation

bash
claude mcp list

Check that your Pinecone MCP server is properly configured.

  • This command lists all MCP servers registered with Claude Code
  • You should see your pinecone-composio entry in the list
  • This confirms that Claude Code can now access Pinecone tools

If everything is wired up, you should see your pinecone-composio entry listed:

Claude Code MCP list showing the toolkit MCP server

Authenticate Pinecone

The first time you try to use Pinecone tools, you'll be prompted to authenticate.

  • Claude Code will detect that you need to authenticate with Pinecone
  • It will show you an authentication link
  • Open the link in your browser (or copy/paste it)
  • Complete the Pinecone authorization flow
  • Return to the terminal and start using Pinecone through Claude Code

Once authenticated, you can ask Claude Code to perform Pinecone operations in natural language. For example:

  • "Query all vectors similar to user question"
  • "Upsert document embeddings into a namespace"
  • "Delete vectors from the archive index"

Complete Code

Here's the complete code to get you started with Pinecone and Claude Code:

import os
from composio import Composio
from dotenv import load_dotenv

load_dotenv()

COMPOSIO_API_KEY = os.getenv("COMPOSIO_API_KEY")
USER_ID = os.getenv("USER_ID")

composio_client = Composio(api_key=COMPOSIO_API_KEY)

composio_session = composio_client.create(
    user_id=USER_ID,
    toolkits=["pinecone"],
)

COMPOSIO_MCP_URL = composio_session.mcp.url

print(f"MCP URL: {COMPOSIO_MCP_URL}")
print(f"\nUse this command to add to Claude Code:")
print(f'claude mcp add --transport http pinecone-composio "{COMPOSIO_MCP_URL}" --headers "X-API-Key:{COMPOSIO_API_KEY}"')

Conclusion

You've successfully integrated Pinecone with Claude Code using Composio's MCP server. Now you can interact with Pinecone directly from your terminal using natural language commands.

Key features of this setup:

  • Terminal-native experience without switching contexts
  • Natural language commands for Pinecone operations
  • Secure authentication through Composio's managed MCP
  • Tool Router for dynamic tool discovery and execution

Next steps:

  • Try asking Claude Code to perform various Pinecone operations
  • Add more toolkits to your Tool Router session for multi-app workflows
  • Integrate this setup into your development workflow for increased productivity

You can extend this by adding more toolkits, implementing custom workflows, or building automation scripts that leverage Claude Code's capabilities.

How to build Pinecone MCP Agent with another framework

OpenAI Agents SDK

OpenAI Agents SDK

Use Pinecone MCP with OpenAI Agents SDK

Claude Agent SDK

Claude Agent SDK

Use Pinecone MCP with Claude Agent SDK

Google ADK

Google ADK

Use Pinecone MCP with Google ADK

LangChain

LangChain

Use Pinecone MCP with LangChain

Vercel AI SDK

Vercel AI SDK

Use Pinecone MCP with Vercel AI SDK

Mastra AI

Mastra AI

Use Pinecone MCP with Mastra AI

LlamaIndex

LlamaIndex

Use Pinecone MCP with LlamaIndex

CrewAI

CrewAI

Use Pinecone MCP with CrewAI

Codex

Codex

Use Pinecone MCP with Codex

FAQ

What are the differences in Tool Router MCP and Pinecone MCP?

With a standalone Pinecone MCP server, the agents and LLMs can only access a fixed set of Pinecone tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Pinecone and many other apps based on the task at hand, all through a single MCP endpoint.

Can I use Tool Router MCP with Claude Code?

Yes, you can. Claude Code fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Pinecone tools.

Can I manage the permissions and scopes for Pinecone while using Tool Router?

Yes, absolutely. You can configure which Pinecone scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

How safe is my data with Composio Tool Router?

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Pinecone data and credentials are handled as safely as possible.

Used by agents from

Context
Letta
glean
HubSpot
Agent.ai
Altera
DataStax
Entelligence
Rolai
Context
Letta
glean
HubSpot
Agent.ai
Altera
DataStax
Entelligence
Rolai
Context
Letta
glean
HubSpot
Agent.ai
Altera
DataStax
Entelligence
Rolai

Never worry about agent reliability

We handle tool reliability, observability, and security so you never have to second-guess an agent action.

Book a call↗Get started for free