How to integrate Pinecone MCP with Claude Agent SDK

This guide walks you through connecting Pinecone to the Claude Agent SDK using the Composio tool router. By the end, you'll have a working Pinecone agent that can query all vectors similar to user question, upsert document embeddings into a namespace, delete vectors from the archive index through natural language commands. This guide will help you understand how to give your Claude Agent SDK agent real control over a Pinecone account through Composio's Pinecone MCP server. Before we dive in, let's take a quick look at the key ideas and tools involved.

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Introduction

This guide will help you understand how to give your Claude Agent SDK agent real control over a Pinecone account through Composio's Pinecone MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

Also integrate Pinecone with

ChatGPT OpenAI Agents SDK Claude Code Claude Cowork Codex OpenCode Cursor VS Code OpenClaw Hermes CLI Google ADK LangChain Vercel AI SDK Mastra AI LlamaIndex CrewAI

TL;DR

Here's what you'll learn:

Get and set up your Claude/Anthropic and Composio API keys
Install the necessary dependencies
Initialize Composio and create a Tool Router session for Pinecone
Configure an AI agent that can use Pinecone as a tool
Run a live chat session where you can ask the agent to perform Pinecone operations

What is Claude Agent SDK?

The Claude Agent SDK is Anthropic's official framework for building AI agents powered by Claude. It provides a streamlined interface for creating agents with MCP tool support and conversation management.

Key features include:

Native MCP Support: Built-in support for Model Context Protocol servers
Permission Modes: Control tool execution permissions
Streaming Responses: Real-time response streaming for interactive applications
Context Manager: Clean async context management for sessions

What is the Pinecone MCP server, and what's possible with it?

The Pinecone MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Pinecone account. It provides structured and secure access so your agent can perform Pinecone operations on your behalf.

What is the Composio tool router, and how does it fit here?

What is Composio SDK?

Composio's Composio SDK helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Composio SDK

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Composio SDK works

The Composio SDK follows a three-phase workflow:

Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Step by step09 STEPS

Prerequisites

Before starting, make sure you have:

Composio API Key and Claude/Anthropic API Key
Primary know-how of Claude Agents SDK
A Pinecone account
Some knowledge of Python

Getting API Keys for Claude/Anthropic and Composio

Claude/Anthropic API Key

Go to the Anthropic Console and create an API key. You'll need credits to use the models.
Keep the API key safe.

Composio API Key

Log in to the Composio dashboard.
Navigate to your API settings and generate a new API key.
Store this key securely as you'll need it for authentication.

Install dependencies

npm install @anthropic-ai/claude-agent-sdk @composio/core dotenv

Install the Composio SDK and the Claude Agents SDK.

What's happening:

@composio/core provides Composio integration for Anthropic
@anthropic-ai/claude-agent-sdk is the core agent framework
dotenv/config loads environment variables

Set up environment variables

bash

COMPOSIO_API_KEY=your_composio_api_key_here
USER_ID=your_user_id_here
ANTHROPIC_API_KEY=your_anthropic_api_key_here

Create a .env file in your project root.

What's happening:

COMPOSIO_API_KEY authenticates with Composio
USER_ID identifies the user for session management
ANTHROPIC_API_KEY authenticates with Anthropic/Claude

Import dependencies

import 'dotenv/config';
import readline from 'node:readline';
import { Composio } from '@composio/core';
import { query, type Options } from "@anthropic-ai/claude-agent-sdk";

dotenv.config();

What's happening:

We're importing all necessary libraries including the Claude Agent SDK and Composio
The dotenv.config() function loads environment variables from your .env file
This setup prepares the foundation for connecting Claude with Pinecone functionality

Create a Composio instance and Tool Router session

async function chat() {
  const { COMPOSIO_API_KEY, USER_ID } = process.env;
  if (!COMPOSIO_API_KEY || !USER_ID) {
    throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
  }

  const composio = new Composio({ apiKey: COMPOSIO_API_KEY });

  // Create Tool Router session for Pinecone
  const session = await composio.create(USER_ID, {
    toolkits: ['pinecone'],
  });
  const mcpUrl = session?.mcp.url;

What's happening:

The function checks for the required COMPOSIO_API_KEY environment variable
We're creating a Composio instance using our API key
The create method creates a Tool Router session for Pinecone
The returned url is the MCP server URL that your agent will use

Configure Claude Agent with MCP

const options: Options = {
  permissionMode: 'bypassPermissions',
  mcpServers: {
    composio: {
      type: 'http',
      url: mcpUrl,
      headers: { 'x-api-key': COMPOSIO_API_KEY }
    }
  },
  systemPrompt: 'You are a helpful assistant with access to Pinecone tools via Composio.',
  maxTurns: 10,
};

What's happening:

We're configuring the Claude Agent options with the MCP server URL
permissionMode: 'bypassPermissions' allows the agent to execute operations without asking for permission each time
The system prompt instructs the agent that it has access to Pinecone
maxTurns: 10 limits the conversation length to prevent excessive API usage

Create client and start chat loop

const rl = readline.createInterface({
    input: process.stdin,
    output: process.stdout,
    prompt: 'You: '
  });

  console.log('\nChat started. Type "exit" to quit.\n');

  let isProcessing = false;

  async function ask(prompt: string) {
    isProcessing = true;
    rl.pause();

    process.stdout.write('Claude is thinking...');
    const stream = query({ prompt, options });

    let firstChunk = true;
    for await (const msg of stream) {
      const content = (msg as any).message?.content || (msg as any).content;
      if (Array.isArray(content)) {
        for (const block of content) {
          if (block.type === 'text' && block.text) {
            if (firstChunk) {
              process.stdout.write('\r\x1b[K');
              process.stdout.write('Claude: ');
              firstChunk = false;
            }
            process.stdout.write(block.text);
          }
        }
      }
    }
    process.stdout.write('\n\n');

    isProcessing = false;
    rl.resume();
    rl.prompt();
  }

  rl.on('line', async (line) => {
    if (isProcessing) return;

    const input = line.trim();
    if (input === 'exit') {
      rl.close();
      process.exit(0);
    }
    if (input) await ask(input);
    else rl.prompt();
  });

  await ask('What can you help me with?');
}

What's happening:

The readline interface is created to handle user input and output
The query function is used to send the user's input to the agent
The chat loop continues until the user types 'exit' or 'quit'

Run the application

try {
  await chat();
} catch (error) {
  console.error(error);
  process.exit(1);
}

What's happening:

The chat function is the entry point for the application
The try-catch block is used to handle any errors that occur

Complete Code

Here's the complete code to get you started with Pinecone and Claude Agent SDK:

import 'dotenv/config';
import readline from 'node:readline';
import { Composio } from '@composio/core';
import { query, type Options } from "@anthropic-ai/claude-agent-sdk";

async function chat() {
  const { COMPOSIO_API_KEY, USER_ID } = process.env;
  if (!COMPOSIO_API_KEY || !USER_ID) {
    throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
  }

  const composio = new Composio({ apiKey: COMPOSIO_API_KEY });
  const session = await composio.create(USER_ID, {
    toolkits: ['pinecone']
  });
  const mcp_url = session?.mcp.url;

  const options: Options = {
    permissionMode: 'bypassPermissions',
    mcpServers: {
      composio: {
        type: 'http',
        url: mcp_url,
        headers: { 'x-api-key': COMPOSIO_API_KEY }
      }
    },
    systemPrompt: 'You are a helpful assistant with access to Pinecone tools via Composio.',
    maxTurns: 10,
  };

  const rl = readline.createInterface({
    input: process.stdin,
    output: process.stdout,
    prompt: 'You: '
  });

  console.log('\nChat started. Type "exit" to quit.\n');

  let isProcessing = false;

  async function ask(prompt: string) {
    isProcessing = true;
    rl.pause();

    process.stdout.write('Claude is thinking...');
    const stream = query({ prompt, options });

    let firstChunk = true;
    for await (const msg of stream) {
      const content = (msg as any).message?.content || (msg as any).content;
      if (Array.isArray(content)) {
        for (const block of content) {
          if (block.type === 'text' && block.text) {
            if (firstChunk) {
              process.stdout.write('\r\x1b[K');
              process.stdout.write('Claude: ');
              firstChunk = false;
            }
            process.stdout.write(block.text);
          }
        }
      }
    }
    process.stdout.write('\n\n');

    isProcessing = false;
    rl.resume();
    rl.prompt();
  }

  rl.on('line', async (line) => {
    if (isProcessing) return;

    const input = line.trim();
    if (input === 'exit') {
      rl.close();
      process.exit(0);
    }
    if (input) await ask(input);
    else rl.prompt();
  });

  await ask('What can you help me with?');
}

try {
  await chat();
} catch (error) {
  console.error(error);
  process.exit(1);
}

Conclusion

You've successfully built a Claude Agent SDK agent that can interact with Pinecone through Composio's Tool Router.

Key features:

Native MCP support through Claude's agent framework
Streaming responses for real-time interaction
Permission bypass for smooth automated workflows

You can extend this by adding more toolkits, implementing custom business logic, or building a web interface around the agent.

TOOLS

Supported Tools

Every Pinecone action and event your agent gets out of the box.

Cancel Bulk Import

Tool to cancel a bulk import operation in Pinecone.

Configure Index

Tool to configure an existing Pinecone index, including pod type, replicas, deletion protection, and tags.

Create Backup

Tool to create a backup of a Pinecone index for disaster recovery and version control.

Create Index

Tool to create a Pinecone index with specified configuration.

Create Index with Embedding Model

Tool to create a Pinecone index with integrated embedding model for automatic vectorization.

Create Index from Backup

Tool to create an index from a backup.

Create Namespace

Tool to create a namespace within a serverless Pinecone index.

Delete Index

Tool to permanently delete a Pinecone index.

Delete Namespace

Tool to permanently delete a namespace from a serverless index.

Describe Backup

Tool to retrieve detailed information about a specific backup.

Describe Bulk Import

Tool to describe a specific bulk import operation in Pinecone.

Describe Index Stats

Tool to get index statistics including vector count per namespace, dimensions, and fullness.

Describe Restore Job

Tool to get detailed information about a specific restore job in Pinecone.

Generate Embeddings

Tool to generate vector embeddings for input text using Pinecone's hosted embedding models.

Get Model Information

Tool to retrieve detailed information about a specific model hosted by Pinecone.

List Bulk Imports

Tool to list all recent and ongoing bulk import operations in Pinecone.

List Collections

Tool to list all collections in a Pinecone project (pod-based indexes only).

List Index Backups

Tool to list all backups for a specific Pinecone index.

List Indexes

Tool to list all indexes in a Pinecone project.

List Available Models

Tool to list all available embedding and reranking models hosted by Pinecone.

List Namespaces

Tool to list all namespaces in a serverless Pinecone index.

List Project Backups

Tool to list all backups for indexes in a Pinecone project.

List Restore Jobs

Tool to list all restore jobs for a project with pagination support.

List Vectors

Tool to list vector IDs in a Pinecone serverless index.

Query Vectors

Tool to perform semantic search within a Pinecone index using a query vector.

Rerank Documents

Tool to rerank documents by semantic relevance to a query.

Search Records in Namespace

Tool to search records within a Pinecone namespace using text, vector, or ID query.

Start Bulk Import

Tool to start an asynchronous bulk import of vectors from object storage (S3, GCS, or Azure Blob Storage) into a Pinecone index.

Update Vector

Tool to update a vector in Pinecone by ID.

Upsert Records to Namespace

Tool to upsert text records into a Pinecone namespace.

FRAMEWORKS

How to build Pinecone MCP Agent with another framework

ChatGPT

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OpenAI Agents SDK

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Claude Code

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Claude Cowork

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Codex

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Cursor

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OpenClaw

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Hermes

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CLI

Use Pinecone MCP with CLI

Google ADK

Use Pinecone MCP with Google ADK

LangChain

Use Pinecone MCP with LangChain

Vercel AI SDK

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Mastra AI

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LlamaIndex

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CrewAI

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OpenCode

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VS Code

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FAQ

Frequently asked questions

With a standalone Pinecone MCP server, the agents and LLMs can only access a fixed set of Pinecone tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Pinecone and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Claude Agent SDK fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Pinecone tools.

Yes, absolutely. You can configure which Pinecone scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Pinecone data and credentials are handled as safely as possible.

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Customer stories

Teams ship real agents on Composio

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Karan skipped his own birthday party to fix our critical issue. It was 10pm and he diverted his Waymo to help us instead. This really sets the bar — it shows the commitment you need when users rely on your software.

Harsha Gaddipati

Co-founder, Slashy

A lot of students tell us that the moment their connected tools start talking to each other inside Opennote feels almost magical. The agent just knows them, and it's immensely helped keep new users on the platform.

Abhi Arya

Co-founder, Opennote

We chose Composio over Pipedream because it delivered depth where it mattered — niche tools and tricky edge cases other platforms simply ignored. That gave us confidence to scale without compromising.

Nirman Dave

CEO, Zams

As a solo builder, shipping fast is life or death. The only way I can outcompete incumbents is by outmanoeuvring them. Getting bogged down managing agent auth would have been a death sentence.

Ryan Yu

Founder, Extra Thursday

Before Composio, adding tool integrations was slow and resource-intensive. Each one could take weeks of engineering time, and maintaining them meant constantly keeping up with API changes.

Tomisin Jenrola

Founder & CEO, SwarmZero

With hands-on help from their founder, we integrated Gmail and Google Drive in just 30 minutes. This level of personal support and commitment is exactly what startups should strive for.

Jerome Leclanche

Co-Founder, Ingram Technologies

How to integrate Pinecone MCP with Claude Agent SDK

Connect Pinecone without auth hassles

Introduction

Also integrate Pinecone with

TL;DR

What is Claude Agent SDK?

What is the Pinecone MCP server, and what's possible with it?

What is the Composio tool router, and how does it fit here?

What is Composio SDK?

How the Composio SDK works

Step-by-step Guide

Prerequisites

Getting API Keys for Claude/Anthropic and Composio

Install dependencies

Set up environment variables

Import dependencies

Create a Composio instance and Tool Router session

Configure Claude Agent with MCP

Create client and start chat loop

Run the application

Complete Code

Conclusion

Supported Tools

How to build Pinecone MCP Agent with another framework

ChatGPT

OpenAI Agents SDK

Claude Code

Claude Cowork

Codex

Cursor

OpenClaw

Hermes

CLI

Google ADK

LangChain

Vercel AI SDK

Mastra AI

LlamaIndex

CrewAI

OpenCode

VS Code

Explore Other Toolkits

Supabase

Composio

Codeinterpreter

GitHub

Frequently asked questions

What are the differences in Tool Router MCP and Pinecone MCP?+

Can I use Tool Router MCP with Claude Agent SDK?+

Can I manage the permissions and scopes for Pinecone while using Tool Router?+

How safe is my data with Composio Tool Router?+

Start with Pinecone.It takes 30 seconds.

Teams ship real agents on Composio