How to integrate Affinda MCP with Claude Agent SDK

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Introduction

This guide walks you through connecting Affinda to the Claude Agent SDK using the Composio tool router. By the end, you'll have a working Affinda agent that can extract invoice data from uploaded pdf, delete a document no longer needed, create a new tag for hr documents, set up webhook for document parsing events through natural language commands.

This guide will help you understand how to give your Claude Agent SDK agent real control over a Affinda account through Composio's Affinda MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

TL;DR

Here's what you'll learn:
  • Get and set up your Claude/Anthropic and Composio API keys
  • Install the necessary dependencies
  • Initialize Composio and create a Tool Router session for Affinda
  • Configure an AI agent that can use Affinda as a tool
  • Run a live chat session where you can ask the agent to perform Affinda operations

What is Claude Agent SDK?

The Claude Agent SDK is Anthropic's official framework for building AI agents powered by Claude. It provides a streamlined interface for creating agents with MCP tool support and conversation management.

Key features include:

  • Native MCP Support: Built-in support for Model Context Protocol servers
  • Permission Modes: Control tool execution permissions
  • Streaming Responses: Real-time response streaming for interactive applications
  • Context Manager: Clean async context management for sessions

What is the Affinda MCP server, and what's possible with it?

The Affinda MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Affinda account. It provides structured and secure access to your document processing workflows, so your agent can upload files, extract data, organize workspaces, label documents, and automate annotation management on your behalf.

  • AI-powered document upload and extraction: Instantly have your agent upload new documents for parsing and extract structured data from various formats using Affinda's advanced AI models.
  • Workspace and collection management: Let your agent create, group, and organize documents into collections and workspaces, keeping your document processing streamlined and organized.
  • Automated annotation updates: Empower your agent to batch update or modify multiple document annotations in a single request, saving you time on manual corrections.
  • Document tagging and organization: Direct your agent to create tags and label documents, making it easy to categorize and quickly retrieve important files.
  • Effortless cleanup and resource management: Have your agent delete unwanted documents or collections, ensuring your Affinda account stays tidy and relevant at all times.

Supported Tools & Triggers

Tools
Batch Update AnnotationsTool to update multiple annotations in one request.
Create CollectionTool to create a new collection.
Create DocumentTool to upload a new document for parsing.
Create OrganizationTool to create a new organization.
Create RESTHook SubscriptionTool to create a new resthook subscription.
Create TagTool to create a new tag.
Create Validation ResultTool to create a validation result.
Create WorkspaceTool to create a new workspace.
Delete CollectionTool to delete a specific collection by its id.
Delete DocumentTool to delete a specific document by its id.
Delete OrganizationTool to delete a specific organization by its id.
Delete Resthook SubscriptionTool to delete a specific resthook subscription by id.
Delete WorkspaceTool to delete a specific workspace by its id.
Delete Workspace MembershipTool to remove a user from a workspace by membership id.
Get TagsTool to list all tags.
Get All Validation ResultsTool to list validation results for documents.
Get Workspace MembershipsTool to list all workspace memberships for the authenticated user.
Get AnnotationsTool to retrieve a list of all annotations.
Get CollectionTool to retrieve details of a specific collection by its id.
Get CollectionsTool to retrieve a list of all collections.
Get DocumentTool to retrieve details of a specific document by its id.
Get DocumentsTool to retrieve a list of all documents.
Get Document TypeTool to retrieve details of a specific document type by its id.
Get Document TypesTool to retrieve a list of all document types.
Get ExtractorsTool to retrieve a list of all extractors.
Get OrganizationTool to retrieve details of a specific organization by its id.
Get OrganizationsTool to retrieve a list of all organizations.
Get Resthook SubscriptionTool to retrieve details of a specific resthook subscription by its id.
Get RESTHook SubscriptionsTool to retrieve a list of all resthook subscriptions.
Get Usage by WorkspaceTool to retrieve monthly credits consumption for a workspace.
Get WorkspaceTool to retrieve details of a specific workspace by its id.
Get Workspace MembershipTool to retrieve details of a specific workspace membership by its id.
Get WorkspacesTool to retrieve a list of all workspaces.
Update CollectionTool to update specific fields of a collection.
Update DocumentTool to update specific fields of a document.
Update Document DataTool to update parsed data for a resume or job description document.
Update OrganizationTool to update specific fields of an organization.
Update RESTHook SubscriptionTool to update an existing resthook subscription.
Update WorkspaceTool to update specific fields of a workspace.

What is the Composio tool router, and how does it fit here?

What is Tool Router?

Composio's Tool Router helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Tool Router

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Tool Router works

The Tool Router follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Prerequisites

Before starting, make sure you have:
  • Composio API Key and Claude/Anthropic API Key
  • Primary know-how of Claude Agents SDK
  • A Affinda account
  • Some knowledge of Python

Getting API Keys for Claude/Anthropic and Composio

Claude/Anthropic API Key
  • Go to the Anthropic Console and create an API key. You'll need credits to use the models.
  • Keep the API key safe.
Composio API Key
  • Log in to the Composio dashboard.
  • Navigate to your API settings and generate a new API key.
  • Store this key securely as you'll need it for authentication.

Install dependencies

pip install composio-anthropic claude-agent-sdk python-dotenv

Install the Composio SDK and the Claude Agents SDK.

What's happening:

  • composio-anthropic provides Composio integration for Anthropic
  • claude-agent-sdk is the core agent framework
  • python-dotenv loads environment variables

Set up environment variables

bash
COMPOSIO_API_KEY=your_composio_api_key_here
USER_ID=your_user_id_here
ANTHROPIC_API_KEY=your_anthropic_api_key_here

Create a .env file in your project root.

What's happening:

  • COMPOSIO_API_KEY authenticates with Composio
  • USER_ID identifies the user for session management
  • ANTHROPIC_API_KEY authenticates with Anthropic/Claude

Import dependencies

import asyncio
from claude_agent_sdk import ClaudeSDKClient, ClaudeAgentOptions
import os
from composio import Composio
from dotenv import load_dotenv

load_dotenv()
What's happening:
  • We're importing all necessary libraries including the Claude Agent SDK and Composio
  • The load_dotenv() function loads environment variables from your .env file
  • This setup prepares the foundation for connecting Claude with Affinda functionality

Create a Composio instance and Tool Router session

async def chat_with_remote_mcp():
    api_key = os.getenv("COMPOSIO_API_KEY")
    if not api_key:
        raise RuntimeError("COMPOSIO_API_KEY is not set")

    composio = Composio(api_key=api_key)

    # Create Tool Router session for Affinda
    mcp_server = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["affinda"]
    )

    url = mcp_server.mcp.url

    if not url:
        raise ValueError("Session URL not found")
What's happening:
  • The function checks for the required COMPOSIO_API_KEY environment variable
  • We're creating a Composio instance using our API key
  • The create method creates a Tool Router session for Affinda
  • The returned url is the MCP server URL that your agent will use

Configure Claude Agent with MCP

# Configure remote MCP server for Claude
options = ClaudeAgentOptions(
    permission_mode="bypassPermissions",
    mcp_servers={
        "composio": {
            "type": "http",
            "url": url,
            "headers": {
                "x-api-key": os.getenv("COMPOSIO_API_KEY")
            }
        }
    },
    system_prompt="You are a helpful assistant with access to Affinda tools via Composio.",
    max_turns=10
)
What's happening:
  • We're configuring the Claude Agent options with the MCP server URL
  • permission_mode="bypassPermissions" allows the agent to execute operations without asking for permission each time
  • The system prompt instructs the agent that it has access to Affinda
  • max_turns=10 limits the conversation length to prevent excessive API usage

Create client and start chat loop

# Create client with context manager
async with ClaudeSDKClient(options=options) as client:
    print("\nChat started. Type 'exit' or 'quit' to end.\n")

    # Main chat loop
    while True:
        user_input = input("You: ").strip()
        if user_input.lower() in {"exit", "quit"}:
            print("Goodbye!")
            break

        # Send query
        await client.query(user_input)

        # Receive and print response
        print("Claude: ", end="", flush=True)
        async for message in client.receive_response():
            if hasattr(message, "content"):
                for block in message.content:
                    if hasattr(block, "text"):
                        print(block.text, end="", flush=True)
        print()
What's happening:
  • The Claude SDK client is created using the async context manager pattern
  • The agent processes each query and streams the response back in real-time
  • The chat loop continues until the user types 'exit' or 'quit'

Run the application

if __name__ == "__main__":
    asyncio.run(chat_with_remote_mcp())
What's happening:
  • This entry point runs the async chat_with_remote_mcp() function using asyncio.run()
  • The application will start, create the MCP connection, and begin the interactive chat session

Complete Code

Here's the complete code to get you started with Affinda and Claude Agent SDK:

import asyncio
from claude_agent_sdk import ClaudeSDKClient, ClaudeAgentOptions
import os
from composio import Composio
from dotenv import load_dotenv

load_dotenv()

async def chat_with_remote_mcp():
    api_key = os.getenv("COMPOSIO_API_KEY")
    if not api_key:
        raise RuntimeError("COMPOSIO_API_KEY is not set")

    composio = Composio(api_key=api_key)

    # Create Tool Router session for Affinda
    mcp_server = composio.create(
        user_id=os.getenv("USER_ID"),
        toolkits=["affinda"]
    )

    url = mcp_server.mcp.url

    if not url:
        raise ValueError("Session URL not found")

    # Configure remote MCP server for Claude
    options = ClaudeAgentOptions(
        permission_mode="bypassPermissions",
        mcp_servers={
            "composio": {
                "type": "http",
                "url": url,
                "headers": {
                    "x-api-key": os.getenv("COMPOSIO_API_KEY")
                }
            }
        },
        system_prompt="You are a helpful assistant with access to Affinda tools via Composio.",
        max_turns=10
    )

    # Create client with context manager
    async with ClaudeSDKClient(options=options) as client:
        print("\nChat started. Type 'exit' or 'quit' to end.\n")

        # Main chat loop
        while True:
            user_input = input("You: ").strip()
            if user_input.lower() in {"exit", "quit"}:
                print("Goodbye!")
                break

            # Send query
            await client.query(user_input)

            # Receive and print response
            print("Claude: ", end="", flush=True)
            async for message in client.receive_response():
                if hasattr(message, "content"):
                    for block in message.content:
                        if hasattr(block, "text"):
                            print(block.text, end="", flush=True)
            print()

if __name__ == "__main__":
    asyncio.run(chat_with_remote_mcp())

Conclusion

You've successfully built a Claude Agent SDK agent that can interact with Affinda through Composio's Tool Router.

Key features:

  • Native MCP support through Claude's agent framework
  • Streaming responses for real-time interaction
  • Permission bypass for smooth automated workflows
You can extend this by adding more toolkits, implementing custom business logic, or building a web interface around the agent.

How to build Affinda MCP Agent with another framework

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Use Affinda MCP with LangChain

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Use Affinda MCP with Vercel AI SDK

Mastra AI

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LlamaIndex

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Use Affinda MCP with LlamaIndex

CrewAI

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Use Affinda MCP with CrewAI

FAQ

What are the differences in Tool Router MCP and Affinda MCP?

With a standalone Affinda MCP server, the agents and LLMs can only access a fixed set of Affinda tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Affinda and many other apps based on the task at hand, all through a single MCP endpoint.

Can I use Tool Router MCP with Claude Agent SDK?

Yes, you can. Claude Agent SDK fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Affinda tools.

Can I manage the permissions and scopes for Affinda while using Tool Router?

Yes, absolutely. You can configure which Affinda scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

How safe is my data with Composio Tool Router?

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Affinda data and credentials are handled as safely as possible.

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