How to integrate Fly MCP with Atomic Agent

Connect Atomic Agent to Fly MCP. Deploy latest image to fly in tokyo, list all running fly apps by region, and more using natural language, with authentication handled for you.

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45 Tools

Introduction

Atomic Agent is an open-source AI agent that runs on your machine and supports local models through llama.cpp. Connect it to 1,500+ apps through Composio, including Fly.

This guide uses Atomic Agent's built-in Composio integration. You need Atomic Agent v0.5.6 or later, your own Composio API key, and a Fly account. See the Atomic Agent documentation for installation instructions.

Also integrate Fly with

How Atomic Agent connects to Fly

Atomic Agent connects to Composio's Tool Router over Streamable HTTP MCP. It discovers the tools needed for your request, and Composio handles account authentication.

Execution and account-connection tools follow Atomic Agent's configured approval policy. Review any approval prompt before allowing an action on your connected account.

Connect Fly to Atomic Agent

  1. Sign up or sign in to the Composio dashboard. Copy your API key.
  2. In Atomic Agent, open the Integrations tab and select Composio. Select API key, press e, paste the key, and press Enter. The tools become available immediately, without a restart.
  3. Ask Atomic Agent to do something in Fly. It searches Composio for the right tool.
  4. On first use, open the sign-in link returned in the chat. Connect your Fly account, then return to Atomic Agent to continue.

Headless setup

Add the following line to ~/.atomic-agent/.env, replacing YOUR_COMPOSIO_API_KEY with your key. Start Atomic Agent after saving the file.

bash
COMPOSIO_API_KEY=YOUR_COMPOSIO_API_KEY

What is the Fly MCP server, and what's possible with it?

The Fly MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Fly account. It provides structured and secure access so your agent can perform Fly operations on your behalf.

Use Fly from Atomic Agent

With your account connected, ask Atomic Agent to work with Fly in natural language. You can connect more apps through the same Composio integration as you need them.

Visit the Atomic Agent website or inspect the Atomic Agent source code.

Troubleshooting

Why is my API key rejected?

Copy the key directly from the Composio dashboard. Atomic Agent requires ASCII characters because it sends the key in an HTTP header. Remove any extra characters introduced when copying.

Why are Composio tools unavailable after saving a key?

Check that you use Atomic Agent v0.5.6 or later and that Composio is enabled in your configuration. A "composio": { "enabled": false } setting disables the integration while keeping the saved key on disk.

Does Composio have a free plan?

The Hobby plan includes 100,000 tool calls per month. Composio-managed OAuth apps have a lower included allowance. See Composio pricing for the current limits that apply to your connection.

TOOLS

Supported Tools

Every Fly action and event your agent gets out of the box.

Add WireGuard Peer

Tool to add a WireGuard peer connection to a Fly.

Check App Name Availability

Tool to validate an app name for Fly.

Check Jobs

Execute GraphQL queries against the Fly.

Check User Only Token

Check whether the authentication token only allows user access.

Create Health Check Job

Tool to create a health check job for monitoring application endpoints in Fly.

Create Check Job Run

Triggers a run of an existing health check job on Fly.

Create Delegated WireGuard Token

Tool to create a delegated WireGuard token for peer management in a Fly.

Create Third-Party Configuration

Tool to create a third-party service configuration for discharging macaroon caveats.

Delete Delegated WireGuard Token

Tool to delete a delegated WireGuard token from a Fly.

Delete Organization

Tool to delete a Fly.

Delete Remote Builder

Tool to delete a remote builder configuration for a Fly.

Delete Third Party Configuration

Tool to delete a third-party service configuration from Fly.

Detach Postgres Cluster

Tool to detach a Postgres cluster from a Fly.

Establish SSH Key

Tool to establish an SSH key for a Fly.

Fetch Nodes by IDs

Fetches a list of node objects from Fly.

Get Add-On

Tool to find a Fly.

Get Add-On Provider

Tool to query information about a specific Fly.

Get app details

Tool to retrieve detailed information about a specific Fly.

Get Certificate

Tool to retrieve a certificate by its ID from Fly.

Get Current Token Info

Tool to get information about the current authentication token.

Get Latest Image Details

Tool to retrieve the latest available tag details for a given image repository from Fly.

Get Latest Image Tag

Tool to retrieve the latest available image tag for a Fly.

Get Machine

Tool to get a single machine by ID from Fly.

Get Nearest Region

Tool to retrieve the nearest Fly.

Get Node by ID

Tool to fetch an object by its globally unique ID using Fly.

Get Organization

Tool to find a Fly.

Get Personal Organization

Tool to retrieve the user's personal organization details from Fly.

Get Placements

Tool to get placement recommendations for Machines in Fly.

Get Platform Information

Tool to retrieve Fly.

Get Products and Pricing

Tool to retrieve Fly.

Get Regions

Tool to get the list of available Fly.

Get Viewer Info

Tool to retrieve the authenticated user's account information from Fly.

Issue Certificate

Tool to issue an SSH certificate for accessing Fly.

List Add-On Plans

Tool to list available add-on service plans from Fly.

List Add-Ons

Tool to list add-ons associated with an organization in Fly.

List Apps

Tool to list all Fly Apps in an organization.

List Apps via GraphQL

List all Fly.

Check Locations

Retrieve all available Fly.

List Machines

Tool to list Fly.

List Organization Machines

Tool to list all Machines across all apps in a Fly organization.

Remove WireGuard Peer

Tool to remove a WireGuard peer connection from a Fly.

Set Apps V2 Default

Tool to configure whether new apps in an organization use Apps V2 by default on Fly.

Update Third-Party Configuration

Tool to update an existing third-party service configuration for discharging macaroon caveats.

Validate Config

Tool to validate a Fly.

Validate WireGuard Peers

Tool to validate WireGuard peer IP addresses in a Fly.

FAQ

Frequently asked questions

With a standalone Fly MCP server, the agents and LLMs can only access a fixed set of Fly tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Fly and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Atomic Agent fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Fly tools.

Yes, absolutely. You can configure which Fly scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Fly data and credentials are handled as safely as possible.

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