How to integrate Fly MCP with Codex

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Introduction

Codex is one of the most popular coding harnesses out there. And MCP makes the experience even better. With Fly MCP integration, you can draft, triage, summarise emails, and much more, all without leaving the terminal or app, whichever you prefer.

Composio removes the Authentication handling completely from you. We handle the entire integration lifecycle, and all you need to do is just copy the URL below, authenticate inside Codex, and start using it.

Why use Composio?

Apart from a managed and hosted MCP server, you will get:

  • CodeAct: A dedicated workbench that allows GPT to write its code to handle complex tool chaining. Reduces to-and-fro with LLMs for frequent tool calling.
  • Large tool responses: Handle them to minimise context rot.
  • Dynamic just-in-time access to 20,000 tools across 870+ other Apps for cross-app workflows. It loads the tools you need, so GPTs aren't overwhelmed by tools you don't need.

How to install Fly MCP in Codex

Codex CLI

Run the command in your terminal.

Terminal

This will auto-redirect you to the Rube authentication page.

Rube authentication redirect page

Once you're authenticated, you will be able to access the tools.

Verify the installation by running:

codex mcp list

If you otherwise prefer to use config.toml, add the following URL to it. You can get the bearer token from rube.app → Use Rube → MCP URL → Generate token

[projects."/home/user/composio"]
trust_level = "untrusted"

[mcp_servers.rube]
bearer_token_env_var = "your bearer token"
enabled = true
url = "https://rube.app/mcp"

Codex in VS Code

If you have installed Codex in VS Code.

Then: ⚙️ → MCP Settings → + Add servers → Streamable HTTP:

Add the Rube MCP URL: https://rube.app/mcp and the bearer token.

VS Code MCP Settings

To verify, click on the Open config.toml

Open config toml in Codex

Make sure it's there:

[mcp_servers.composio_rube]
bearer_token_env_var = "your bearer token"
enabled = true
url = "https://rube.app/mcp"

Codex App

Codex App follows the same approach as VS Code.

  1. Click ⚙️ on the bottom left → MCP Servers → + Add servers → Streamable HTTP:
Codex App MCP Settings
  1. Restart and verify if it's there in .codex/config.toml
[mcp_servers.composio_rube]
bearer_token_env_var = "your bearer token"
enabled = true
url = "https://rube.app/mcp"
  1. Save, restart the extension, and start working.

What is the Fly MCP server, and what's possible with it?

The Fly MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Fly account. It provides structured and secure access so your agent can perform Fly operations on your behalf.

Supported Tools & Triggers

Tools
Add WireGuard PeerTool to add a WireGuard peer connection to a Fly.
Check App Name AvailabilityTool to validate an app name for Fly.
Check JobsExecute GraphQL queries against the Fly.
Check User Only TokenCheck whether the authentication token only allows user access.
Create Health Check JobTool to create a health check job for monitoring application endpoints in Fly.
Create Check Job RunTriggers a run of an existing health check job on Fly.
Create Delegated WireGuard TokenTool to create a delegated WireGuard token for peer management in a Fly.
Create Third-Party ConfigurationTool to create a third-party service configuration for discharging macaroon caveats.
Delete Delegated WireGuard TokenTool to delete a delegated WireGuard token from a Fly.
Delete OrganizationTool to delete a Fly.
Delete Remote BuilderTool to delete a remote builder configuration for a Fly.
Delete Third Party ConfigurationTool to delete a third-party service configuration from Fly.
Detach Postgres ClusterTool to detach a Postgres cluster from a Fly.
Establish SSH KeyTool to establish an SSH key for a Fly.
Fetch Nodes by IDsFetches a list of node objects from Fly.
Get Add-OnTool to find a Fly.
Get Add-On ProviderTool to query information about a specific Fly.
Get app detailsTool to retrieve detailed information about a specific Fly.
Get CertificateTool to retrieve a certificate by its ID from Fly.
Get Current Token InfoTool to get information about the current authentication token.
Get Latest Image DetailsTool to retrieve the latest available tag details for a given image repository from Fly.
Get Latest Image TagTool to retrieve the latest available image tag for a Fly.
Get MachineTool to get a single machine by ID from Fly.
Get Nearest RegionTool to retrieve the nearest Fly.
Get Node by IDTool to fetch an object by its globally unique ID using Fly.
Get OrganizationTool to find a Fly.
Get Personal OrganizationTool to retrieve the user's personal organization details from Fly.
Get PlacementsTool to get placement recommendations for Machines in Fly.
Get Platform InformationTool to retrieve Fly.
Get Products and PricingTool to retrieve Fly.
Get RegionsTool to get the list of available Fly.
Get Viewer InfoTool to retrieve the authenticated user's account information from Fly.
Issue CertificateTool to issue an SSH certificate for accessing Fly.
List Add-On PlansTool to list available add-on service plans from Fly.
List Add-OnsTool to list add-ons associated with an organization in Fly.
List AppsTool to list all Fly Apps in an organization.
List Apps via GraphQLList all Fly.
Check LocationsRetrieve all available Fly.
List MachinesTool to list Fly.
List Organization MachinesTool to list all Machines across all apps in a Fly organization.
Remove WireGuard PeerTool to remove a WireGuard peer connection from a Fly.
Set Apps V2 DefaultTool to configure whether new apps in an organization use Apps V2 by default on Fly.
Update Third-Party ConfigurationTool to update an existing third-party service configuration for discharging macaroon caveats.
Validate ConfigTool to validate a Fly.
Validate WireGuard PeersTool to validate WireGuard peer IP addresses in a Fly.

Conclusion

You've successfully integrated Fly with Codex using Composio's Rube MCP server. Now you can interact with Fly directly from your terminal, VS Code, or the Codex App using natural language commands.

Key benefits of this setup:

  • Seamless integration across CLI, VS Code, and standalone app
  • Natural language commands for Fly operations
  • Managed authentication through Composio's Rube
  • Access to 20,000+ tools across 870+ apps for cross-app workflows
  • CodeAct workbench for complex tool chaining

Next steps:

  • Try asking Codex to perform various Fly operations
  • Explore cross-app workflows by connecting more toolkits
  • Build automation scripts that leverage Codex's AI capabilities

How to build Fly MCP Agent with another framework

OpenAI Agents SDK

OpenAI Agents SDK

Use Fly MCP with OpenAI Agents SDK

Claude Agent SDK

Claude Agent SDK

Use Fly MCP with Claude Agent SDK

Google ADK

Google ADK

Use Fly MCP with Google ADK

LangChain

LangChain

Use Fly MCP with LangChain

Vercel AI SDK

Vercel AI SDK

Use Fly MCP with Vercel AI SDK

Mastra AI

Mastra AI

Use Fly MCP with Mastra AI

LlamaIndex

LlamaIndex

Use Fly MCP with LlamaIndex

CrewAI

CrewAI

Use Fly MCP with CrewAI

Claude Code

Claude Code

Use Fly MCP with Claude Code

FAQ

What are the differences in Tool Router MCP and Fly MCP?

With a standalone Fly MCP server, the agents and LLMs can only access a fixed set of Fly tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Fly and many other apps based on the task at hand, all through a single MCP endpoint.

Can I use Tool Router MCP with Codex?

Yes, you can. Codex fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Fly tools.

Can I manage the permissions and scopes for Fly while using Tool Router?

Yes, absolutely. You can configure which Fly scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

How safe is my data with Composio Tool Router?

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Fly data and credentials are handled as safely as possible.

Used by agents from

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HubSpot
Agent.ai
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Entelligence
Rolai

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