How to integrate Sourcegraph MCP with Atomic Agent

Connect Atomic Agent to Sourcegraph MCP. Show all languages used in repo backend-service, compare latest two commits in project web-ui, and more using natural language, with authentication handled for you.

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Api Key

Sourcegraph is a code intelligence platform for searching, understanding, and managing code across large-scale repositories. It helps developers find, review, and analyze code quickly, boosting productivity and collaboration.

8 Tools

Introduction

Atomic Agent is an open-source AI agent that runs on your machine and supports local models through llama.cpp. Connect it to 1,500+ apps through Composio, including Sourcegraph.

This guide uses Atomic Agent's built-in Composio integration. You need Atomic Agent v0.5.6 or later, your own Composio API key, and a Sourcegraph account. See the Atomic Agent documentation for installation instructions.

Also integrate Sourcegraph with

How Atomic Agent connects to Sourcegraph

Atomic Agent connects to Composio's Tool Router over Streamable HTTP MCP. It discovers the tools needed for your request, and Composio handles account authentication.

Execution and account-connection tools follow Atomic Agent's configured approval policy. Review any approval prompt before allowing an action on your connected account.

Connect Sourcegraph to Atomic Agent

  1. Sign up or sign in to the Composio dashboard. Copy your API key.
  2. In Atomic Agent, open the Integrations tab and select Composio. Select API key, press e, paste the key, and press Enter. The tools become available immediately, without a restart.
  3. Ask Atomic Agent to do something in Sourcegraph. It searches Composio for the right tool.
  4. On first use, open the sign-in link returned in the chat. Connect your Sourcegraph account, then return to Atomic Agent to continue.

Headless setup

Add the following line to ~/.atomic-agent/.env, replacing YOUR_COMPOSIO_API_KEY with your key. Start Atomic Agent after saving the file.

bash
COMPOSIO_API_KEY=YOUR_COMPOSIO_API_KEY

What is the Sourcegraph MCP server, and what's possible with it?

The Sourcegraph MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Sourcegraph account. It provides structured and secure access to your codebase, so your agent can perform actions like searching repositories, inspecting commits, fetching file contents, and analyzing code languages on your behalf.

  • Repository discovery and listing: Let your agent list all repositories in your Sourcegraph instance, making it easy to navigate and select codebases for deeper analysis.
  • Commit inspection and comparison: Have the agent fetch details about specific commits or compare two commits to see file-level changes and diffs in any repository.
  • File content retrieval: Ask your agent to fetch the raw contents of any file in your codebase—no cloning or manual browsing required.
  • Repository file and language enumeration: Enable the agent to list all files, directories, and programming languages used in a given repository for a comprehensive code overview.
  • User identity and permissions checks: Let your agent verify the authenticated user or check site settings permissions before performing sensitive actions.

Use Sourcegraph from Atomic Agent

With your account connected, ask Atomic Agent to work with Sourcegraph in natural language. You can connect more apps through the same Composio integration as you need them.

Visit the Atomic Agent website or inspect the Atomic Agent source code.

Troubleshooting

Why is my API key rejected?

Copy the key directly from the Composio dashboard. Atomic Agent requires ASCII characters because it sends the key in an HTTP header. Remove any extra characters introduced when copying.

Why are Composio tools unavailable after saving a key?

Check that you use Atomic Agent v0.5.6 or later and that Composio is enabled in your configuration. A "composio": { "enabled": false } setting disables the integration while keeping the saved key on disk.

Does Composio have a free plan?

The Hobby plan includes 100,000 tool calls per month. Composio-managed OAuth apps have a lower included allowance. See Composio pricing for the current limits that apply to your connection.

TOOLS

Supported Tools

Every Sourcegraph action and event your agent gets out of the box.

Check Site Settings Edit Permission

Tool to check whether site settings can be edited through the API.

Compare Commits

Tool to compare two commits in a repository and retrieve their file diffs.

Get Commit Details

Get detailed information about a specific commit in a repository.

Get Current User

Tool to retrieve information about the currently authenticated user.

Get File Contents

Tool to fetch the contents of a specified file on the default branch.

List Repositories

Tool to list repositories on the Sourcegraph instance.

List Repository Files

Tool to list all files and directories in a repository path.

List repository languages

Tool to list languages used in a repository.

FAQ

Frequently asked questions

With a standalone Sourcegraph MCP server, the agents and LLMs can only access a fixed set of Sourcegraph tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Sourcegraph and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Atomic Agent fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Sourcegraph tools.

Yes, absolutely. You can configure which Sourcegraph scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Sourcegraph data and credentials are handled as safely as possible.

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