How to integrate Needle MCP with Atomic Agent

Connect Atomic Agent to Needle MCP. List all document collections i have, show stats for your 'research' collection, and more using natural language, with authentication handled for you.

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Needle is a RAG (retrieval-augmented generation) toolkit that brings semantic search capabilities to your own data. It lets you build smarter AI agents by giving them context-aware, accurate information retrieval.

16 Tools

Introduction

Atomic Agent is an open-source AI agent that runs on your machine and supports local models through llama.cpp. Connect it to 1,500+ apps through Composio, including Needle.

This guide uses Atomic Agent's built-in Composio integration. You need Atomic Agent v0.5.6 or later, your own Composio API key, and a Needle account. See the Atomic Agent documentation for installation instructions.

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How Atomic Agent connects to Needle

Atomic Agent connects to Composio's Tool Router over Streamable HTTP MCP. It discovers the tools needed for your request, and Composio handles account authentication.

Execution and account-connection tools follow Atomic Agent's configured approval policy. Review any approval prompt before allowing an action on your connected account.

Connect Needle to Atomic Agent

  1. Sign up or sign in to the Composio dashboard. Copy your API key.
  2. In Atomic Agent, open the Integrations tab and select Composio. Select API key, press e, paste the key, and press Enter. The tools become available immediately, without a restart.
  3. Ask Atomic Agent to do something in Needle. It searches Composio for the right tool.
  4. On first use, open the sign-in link returned in the chat. Connect your Needle account, then return to Atomic Agent to continue.

Headless setup

Add the following line to ~/.atomic-agent/.env, replacing YOUR_COMPOSIO_API_KEY with your key. Start Atomic Agent after saving the file.

bash
COMPOSIO_API_KEY=YOUR_COMPOSIO_API_KEY

What is the Needle MCP server, and what's possible with it?

The Needle MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Needle account. It provides structured and secure access to your semantic search collections, so your agent can perform actions like creating and managing collections, uploading and deleting files, retrieving collection statistics, and listing available data sources on your behalf.

  • Collection management and creation: Easily instruct your agent to create new semantic search collections tailored to your data needs.
  • File listing and retrieval: Have your agent list and retrieve all files within a specific collection, making it simple to view and organize your indexed data.
  • File deletion from collections: Direct your agent to remove unwanted or outdated files from any collection by specifying file IDs for cleanup and maintenance.
  • Collection statistics and insights: Ask your agent to fetch real-time statistics on any collection, including document counts, index size, and timestamps to monitor your data health.
  • Browse all available collections: Let your agent page through and present all your collections, so you can quickly access, search, or manage your data resources.

Use Needle from Atomic Agent

With your account connected, ask Atomic Agent to work with Needle in natural language. You can connect more apps through the same Composio integration as you need them.

Visit the Atomic Agent website or inspect the Atomic Agent source code.

Troubleshooting

Why is my API key rejected?

Copy the key directly from the Composio dashboard. Atomic Agent requires ASCII characters because it sends the key in an HTTP header. Remove any extra characters introduced when copying.

Why are Composio tools unavailable after saving a key?

Check that you use Atomic Agent v0.5.6 or later and that Composio is enabled in your configuration. A "composio": { "enabled": false } setting disables the integration while keeping the saved key on disk.

Does Composio have a free plan?

The Hobby plan includes 100,000 tool calls per month. Composio-managed OAuth apps have a lower included allowance. See Composio pricing for the current limits that apply to your connection.

TOOLS

Supported Tools

Every Needle action and event your agent gets out of the box.

Add files to a collection

Tool to add files to a collection by providing file URLs.

Add Files to Local Connector

Tool to add files to a local connector by providing file metadata.

Create Collection

Tool to create a new collection.

Create Local Connector

Tool to create a local connector that monitors specified folders on a device.

Delete files from a collection

Tool to delete files from a specific collection by providing file IDs.

Delete files from local connector

Tool to delete files from a local connector by filename or file IDs.

Get Collection

Tool to retrieve details for a specific collection by its ID.

Get collection stats

Tool to retrieve statistics for a specific collection by its ID.

Get File Download URL

Tool to get a short-lived signed private download URL for a Needle file.

Get File Upload URL

Tool to get signed URLs for uploading local files to Needle.

Get local connector

Tool to retrieve details of a local connector by its ID.

List Collection Files

Tool to list all files within a specific collection by its ID.

List Collections

Tool to list collections.

List Connectors

Tool to list connectors.

List Local Connectors

Tool to list local connectors.

Search Collection

Tool to perform semantic search within a specific Needle collection and return ranked results with source references.

FAQ

Frequently asked questions

With a standalone Needle MCP server, the agents and LLMs can only access a fixed set of Needle tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Needle and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Atomic Agent fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Needle tools.

Yes, absolutely. You can configure which Needle scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Needle data and credentials are handled as safely as possible.

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